School of BioSciences - Research Publications

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    What vaccination rate(s) minimize total societal costs after 'opening up' to COVID-19? Age-structured SIRM results for the Delta variant in Australia (New South Wales, Victoria and Western Australia).
    Chu, L ; Grafton, RQ ; Kompas, T ; Nichols, BE (Public Library of Science (PLoS), 2022)
    Using three age-structured, stochastic SIRM models, calibrated to Australian data post July 2021 with community transmission of the Delta variant, we projected possible public health outcomes (daily cases, hospitalisations, ICU beds, ventilators and fatalities) and economy costs for three states: New South Wales (NSW), Victoria (VIC) and Western Australia (WA). NSW and VIC have had on-going community transmission from July 2021 and were in 'lockdown' to suppress transmission. WA did not have on-going community transmission nor was it in lockdown at the model start date (October 11th 2021) but did maintain strict state border controls. We projected the public health outcomes and the economic costs of 'opening up' (relaxation of lockdowns in NSW and VIC or fully opening the state border for WA) at alternative vaccination rates (70%, 80% and 90%), compared peak patient demand for ICU beds and ventilators to staffed state-level bed capacity, and calculated a 'preferred' vaccination rate that minimizes societal costs and that varies by state. We found that the preferred vaccination rate for all states is at least 80% and that the preferred population vaccination rate is increasing with: (1) the effectiveness (infection, hospitalization and fatality) of the vaccine; (2) the lower is the daily lockdown cost; (3) the larger are the public health costs from COVID-19; (4) the higher is the rate of community transmission before opening up; and (5) the less effective are the public health measures after opening up.
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    Reconstructing the dynamics of managed populations to estimate the impact of citizen surveillance
    Spring, D ; Le, TP ; Bloom, SA ; Keith, JM ; Kompas, T (ELSEVIER, 2023-01)
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    Considering health damages and co-benefits in climate change policy assessment.
    Longden, T ; Kompas, T ; Norman, R ; Vardoulakis, S (Elsevier BV, 2022-09)
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    Integrated perspective on translating biophysical to economic impacts of climate change
    Piontek, F ; Drouet, L ; Emmerling, J ; Kompas, T ; Mejean, A ; Otto, C ; Rising, JS ; Soergel, B ; Taconet, N ; Tavoni, M (NATURE PORTFOLIO, 2021-07)
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    Optimal surveillance against bioinvasions: a sample average approximation method applied to an agent-based spread model
    Hoa-Thi-Minh, N ; Pham, VH ; Kompas, T (WILEY, 2021-12)
    Trade-offs exist between the point of early detection and the future cost of controlling any invasive species. Finding optimal levels of early detection, with post-border active surveillance, where time, space and randomness are explicitly considered, is computationally challenging. We use a stochastic programming model to find the optimal level of surveillance and predict damages, easing the computational challenge by combining a sample average approximation (SAA) approach and parallel processing techniques. The model is applied to the case of Asian Papaya Fruit Fly (PFF), a highly destructive pest, in Queensland, Australia. To capture the non-linearity in PFF spread, we use an agent-based model (ABM), which is calibrated to a highly detailed land-use raster map (50 m × 50 m) and weather-related data, validated against a historical outbreak. The combination of SAA and ABM sets our work apart from the existing literature. Indeed, despite its increasing popularity as a powerful analytical tool, given its granularity and capability to model the system of interest adequately, the complexity of ABM limits its application in optimizing frameworks due to considerable uncertainty about solution quality. In this light, the use of SAA ensures quality in the optimal solution (with a measured optimality gap) while still being able to handle large-scale decision-making problems. With this combination, our application suggests that the optimal (economic) trap grid size for PFF in Queensland is ˜0.7 km, much smaller than the currently implemented level of 5 km. Although the current policy implies a much lower surveillance cost per year, compared with the $2.08 million under our optimal policy, the expected total cost of an outbreak is $23.92 million, much higher than the optimal policy of roughly $7.74 million.
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    Equilibrium Modeling for Environmental Science: Exploring the Nexus of Economic Systems and Environmental Change
    Cantele, M ; Bal, P ; Kompas, T ; Hadjikakou, M ; Wintle, B (AMER GEOPHYSICAL UNION, 2021-09)
    Abstract Equilibrium models (EMs) are frequently employed to examine the potential impacts of economic, energy, and trade policies as well as form the foundation of most integrated assessment models. Despite their central role coupling economic and environmental systems, environmental scientists are largely unfamiliar with the structure and methodology underpinning EMs, which serves as a barrier to interdisciplinary collaboration and model improvement. In this study we systematically extract data from 10 years of published EMs with a focus on how these models have been extended beyond their economic origins to encompass environmentally relevant sectors of interest. The results indicate that there is far greater spatial coverage of high income countries compared to low income countries, with notable gaps in Central America, Africa, the Middle East, and Central Asia. We also find a high degree of aggregation within production inputs and sectoral outputs, particularly within the context of global socioeconomic scenarios. For example, we were unable to identify a single temporally dynamic study that distinguished between products arising from managed versus natural forest, or pastures relative to natural grasslands. Due to the necessary breadth and associated knowledge gaps within a model of the entire global economy, we see considerable potential for cross‐disciplinary innovation as natural scientists gain familiarity into the role these models play in bridging the nexus between socioeconomic systems and environmental change.
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    Post-outbreak surveillance strategies to support proof of freedom from foot-and-mouth disease
    Bradhurst, R ; Garner, G ; East, I ; Death, C ; Dodd, A ; Kompas, T ( 2021-04-28)
    Abstract Whilst emergency vaccination may help contain foot-and-mouth disease in a previously FMD-free country, its use complicates post-outbreak surveillance and the recovery of FMD-free status. A structured surveillance program is required that can distinguish between vaccinated and residually infected animals, and provide statistical confidence that the virus is no longer circulating in previously infected areas. Epidemiological models have been well-used to investigate the potential benefits of emergency vaccination during a control progam and when/where/whom to vaccinate in the face of finite supplies of vaccine and personnel. Less well studied are post-outbreak issues such as the management of vaccinated animals and the implications of having used vaccination during surveillance regimes to support proof-of-freedom. This paper presents enhancements to the Australian Animal Disease Model (AADIS) that allow comparisons of different post-outbreak surveillance sampling regimes for establishing proof-of-freedom from FMD. A case study is provided that compares a baseline surveillance sampling regime (derived from current OIE guidelines), with an alternative less intensive sampling regime. It was found that when vaccination was not part of the control program, a reduced sampling intensity significantly reduced the number of samples collected and the cost of the post-outbreak surveillance program, without increasing the risk of missing residual infected herds.
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    Approaches for estimating benefits and costs of interventions in plant biosecurity across invasion phases
    Welsh, MJ ; Turner, JA ; Epanchin-Niell, RS ; Monge, JJ ; Soliman, T ; Robinson, AP ; Kean, JM ; Phillips, C ; Stringer, LD ; Vereijssen, J ; Liebhold, AM ; Kompas, T ; Ormsby, M ; Brockerhoff, EG (WILEY, 2021-07)
    Nonnative plant pests cause billions of dollars in damages. It is critical to prevent or reduce these losses by intervening at various stages of the invasion process, including pathway risk management (to prevent pest arrival), surveillance and eradication (to counter establishment), and management of established pests (to limit damages). Quantifying benefits and costs of these interventions is important to justify and prioritize investments and to inform biosecurity policy. However, approaches for these estimations differ in (1) the assumed relationship between supply, demand, and prices, and (2) the ability to assess different types of direct and indirect costs at invasion stages, for a given arrival or establishment probability. Here we review economic approaches available to estimate benefits and costs of biosecurity interventions to inform the appropriate selection of approaches. In doing so, we complement previous studies and reviews on estimates of damages from invasive species by considering the influence of economic and methodological assumptions. Cost accounting is suitable for rapid decisions, specific impacts, and simple methodological assumptions but fails to account for feedbacks, such as market adjustments, and may overestimate long-term economic impacts. Partial equilibrium models consider changes in consumer and producer surplus due to pest impacts or interventions and can account for feedbacks in affected sectors but require specialized economic models, comprehensive data sets, and estimates of commodity supply and demand curves. More intensive computable general equilibrium models can account for feedbacks across entire economies, including capital and labor, and linkages among these. The two major considerations in choosing an approach are (1) the goals of the analysis (e.g., consideration of a single pest or intervention with a limited range of impacts vs. multiple interventions, pests or sectors), and (2) the resources available for analysis such as knowledge, budget and time.
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    Epidemiological modelling of the health and economic effects of COVID-19 control in Australia's second wave
    Grafton, RQ ; Parslow, J ; Kompas, T ; Glass, K ; Banks, E (SPRINGER HEIDELBERG, 2023-06)
    BACKGROUND: We investigated the public health and economy outcomes of different levels of social distancing to control a 'second wave' outbreak in Australia and identify implications for public health management of COVID-19. METHODS: Individual-based and compartment models were used to simulate the effects of different social distancing and detection strategies on Australian COVID-19 infections and the economy from March to July 2020. These models were used to evaluate the effects of different social distancing levels and the early relaxation of suppression measures, in terms of public health and economy outcomes. RESULTS: The models, fitted to observations up to July 2020, yielded projections consistent with subsequent cases and showed that better public health outcomes and lower economy costs occur when social distancing measures are more stringent, implemented earlier and implemented for a sufficiently long duration. Early relaxation of suppression results in worse public health outcomes and higher economy costs. CONCLUSIONS: Better public health outcomes (reduced COVID-19 fatalities) are positively associated with lower economy costs and higher levels of social distancing; achieving zero community transmission lowers both public health and economy costs compared to allowing community transmission to continue; and early relaxation of social distancing increases both public health and economy costs.