Electrical and Electronic Engineering - Research Publications
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ItemA comparative study on approximate entropy measure and poincare plot indexes of minimum foot clearance variability in the elderly during walking(BMC, 2008-02-02)BACKGROUND: Trip-related falls which is a major problem in the elderly population, might be linked to declines in the balance control function due to ageing. Minimum foot clearance (MFC) which provides a more sensitive measure of the motor function of the locomotor system, has been identified as a potential gait parameter associated with trip-related falls in older population. This paper proposes nonlinear indexes (approximate entropy (ApEn) and Poincaré plot indexes) of MFC variability and investigates the relationship of MFC with derived indexes of elderly gait patterns. The main aim is to find MFC variability indexes that well correlate with balance impairments. METHODS: MFC data during treadmill walking for 14 healthy elderly and 10 elderly participants with balance problems and a history of falls (falls risk) were analysed using a PEAK-2D motion analysis system. ApEn and Poincaré plot indexes of all MFC data sets were calculated and compared. RESULTS: Significant relationships of mean MFC with Poincaré plot indexes (SD1, SD2) and ApEn (r = 0.70, p < 0.05; r = 0.86, p < 0.01; r = 0.74, p < 0.05) were found in the falls-risk elderly group. On the other hand, such relationships were absent in the healthy elderly group. In contrast, the ApEn values of MFC data series were significantly (p < 0.05) correlated with Poincaré plot indexes of MFC in the healthy elderly group, whereas correlations were absent in the falls-risk group. The ApEn values in the falls-risk group (mean ApEn = 0.18 +/- 0.03) was significantly (p < 0.05) higher than that in the healthy group (mean ApEn = 0.13 +/- 0.13). The higher ApEn values in the falls-risk group might indicate increased irregularities and randomness in their gait patterns and an indication of loss of gait control mechanism. ApEn values of randomly shuffled MFC data of falls risk subjects did not show any significant relationship with mean MFC. CONCLUSION: Results have implication for quantifying gait dynamics in normal and pathological conditions, thus could be useful for the early diagnosis of at-risk gait. Further research should provide important information on whether falls prevention intervention can improve the gait performance of falls risk elderly by monitoring the change in MFC variability indexes.
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ItemPrediction of cystine connectivity using SVM(BIOMEDICAL INFORMATICS, 2005)One of the major contributors to protein structures is the formation of disulphide bonds between selected pairs of cysteines at oxidized state. Prediction of such disulphide bridges from sequence is challenging given that the possible combination of cysteine pairs as the number of cysteines increases in a protein. Here, we describe a SVM (support vector machine) model for the prediction of cystine connectivity in a protein sequence with and without a priori knowledge on their bonding state. We make use of a new encoding scheme based on physico-chemical properties and statistical features (probability of occurrence of each amino acid residue in different secondary structure states along with PSI-blast profiles). We evaluate our method in SPX (an extended dataset of SP39 (swiss-prot 39) and SP41 (swiss-prot 41) with known disulphide information from PDB) dataset and compare our results with the recursive neural network model described for the same dataset.
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ItemIncremental training of support vector machines(IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2005-01)We propose a new algorithm for the incremental training of support vector machines (SVMs) that is suitable for problems of sequentially arriving data and fast constraint parameter variation. Our method involves using a "warm-start" algorithm for the training of SVMs, which allows us to take advantage of the natural incremental properties of the standard active set approach to linearly constrained optimization problems. Incremental training involves quickly retraining a support vector machine after adding a small number of additional training vectors to the training set of an existing (trained) support vector machine. Similarly, the problem of fast constraint parameter variation involves quickly retraining an existing support vector machine using the same training set but different constraint parameters. In both cases, we demonstrate the computational superiority of incremental training over the usual batch retraining method.
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ItemInvestigating scale invariant dynamics in minimum toe clearance variability of the young and elderly during treadmill walking(IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2008-08)Current research applying variability measures of gait parameters has demonstrated promise for helping to solve one of the "holy grails" of geriatric research by defining markers that can be used to prospectively identify persons at risk of falling . The minimum toe clearance (MTC) event occurs during the leg swing phase of the gait cycle and is a task highly sensitive to the spatial and balance control properties of the locomotor system. The aim of this study is to build upon the current state of research by investigating the magnitude and dynamic structure from the MTC time series fluctuations due to aging and locomotor disorder. Thirty healthy young (HY), 27 healthy elderly (HE), and 10 falls risk (FR) elderly individuals (who presented a prior history of trip-related falls) participated in treadmill walking for at least 10 min at their preferred speed. Continuous MTC data were collected and the first 512 data points were analyzed. The following variability indices were quantified: 1) MTC mean and standard deviation (SD), 2) PoincarE plot indices of MTC variability (SD1, SD2, SD1/SD2), 3) a wavelet based multiscale exponent beta to describe the dynamic structure of MTC fluctuations, and 4) detrended fluctuation analysis exponent alpha to investigate the presence of long-range correlations in MTC time series data. Results showed that stride-to-stride MTC time series has a nonlinear structure in all three groups when compared against randomly shuffled surrogate MTC data. Test on aging effects showed the MTC central tendency was significantly lower (p < 0.01) and the magnitude of the MTC variability significantly higher (p < 0.01). This trend changed when comparing FR subjects against age-matched HE as both the central tendency (p < 0.01) and magnitude of the variability (p < 0.01) increased significantly in FR. Although the magnitude of MTC variability increased with age, the nonlinear indices represented by alpha, beta, and SD1/SD2 demonstrated that the nonlinear structure of MTC does not change significantly due to aging (p > 0.05). There were, however, significant differences between HY and FR for beta (between scale 1 and 2; p < 0.01) and alpha (p < 0.05). Out of all the variability measures applied, beta(Wv2-4), SD1/SD2, SD2 of critical MTC parameter were found to be potential markers to be able to reliably identify FR from HE subjects. Further research is required to understand the mechanisms underlying the cause of MTC variability.
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ItemApplication-oriented flow control: Fundamentals, algorithms and fairness(IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2006-12)
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ItemAnomaly detection in wireless sensor networks(IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2008-08)
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ItemPROTEIN SECONDARY STRUCTURE PREDICTION USING SUPPORT VECTOR MACHINES AND A NEW FEATURE REPRESENTATION(WORLD SCIENTIFIC PUBL CO PTE LTD, 2006-12)Knowledge of the secondary structure and solvent accessibility of a protein plays a vital role in the prediction of fold, and eventually the tertiary structure of the protein. A challenging issue of predicting protein secondary structure from sequence alone is addressed. Support vector machines (SVM) are employed for the classification and the SVM outputs are converted to posterior probabilities for multi-class classification. The effect of using Chou–Fasman parameters and physico-chemical parameters along with evolutionary information in the form of position specific scoring matrix (PSSM) is analyzed. These proposed methods are tested on the RS126 and CB513 datasets. A new dataset is curated (PSS504) using recent release of CATH. On the CB513 dataset, sevenfold cross-validation accuracy of 77.9% was obtained using the proposed encoding method. A new method of calculating the reliability index based on the number of votes and the Support Vector Machine decision value is also proposed. A blind test on the EVA dataset gives an average Q3accuracy of 74.5% and ranks in top five protein structure prediction methods. Supplementary material including datasets are available on .