Optometry and Vision Sciences - Research Publications

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    A Three-Dimensional Atlas of the Honeybee Neck
    Berry, RP ; Ibbotson, MR ; Giurfa, M (PUBLIC LIBRARY SCIENCE, 2010-05-24)
    Three-dimensional digital atlases are rapidly becoming indispensible in modern biology. We used serial sectioning combined with manual registration and segmentation of images to develop a comprehensive and detailed three-dimensional atlas of the honeybee head-neck system. This interactive atlas includes skeletal structures of the head and prothorax, the neck musculature, and the nervous system. The scope and resolution of the model exceeds atlases previously developed on similar sized animals, and the interactive nature of the model provides a far more accessible means of interpreting and comprehending insect anatomy and neuroanatomy.
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    Edge Detection in Landing Budgerigars (Melopsittacus undulatus)
    Bhagavatula, P ; Claudianos, C ; Ibbotson, M ; Srinivasan, M ; Warrant, E (PUBLIC LIBRARY SCIENCE, 2009-10-07)
    BACKGROUND: While considerable scientific effort has been devoted to studying how birds navigate over long distances, relatively little is known about how targets are detected, obstacles are avoided and smooth landings are orchestrated. Here we examine how visual features in the environment, such as contrasting edges, determine where a bird will land. METHODOLOGY/PRINCIPAL FINDINGS: Landing in budgerigars (Melopsittacus undulatus) was investigated by training them to fly from a perch to a feeder, and video-filming their landings. The feeder was placed on a grey disc that produced a contrasting edge against a uniformly blue background. We found that the birds tended to land primarily at the edge of the disc and walk to the feeder, even though the feeder was in the middle of the disc. This suggests that the birds were using the visual contrast at the boundary of the disc to target their landings. When the grey level of the disc was varied systematically, whilst keeping the blue background constant, there was one intermediate grey level at which the budgerigar's preference for the disc boundary disappeared. The budgerigars then landed randomly all over the test surface. Even though this disc is (for humans) clearly distinguishable from the blue background, it offers very little contrast against the background, in the red and green regions of the spectrum. CONCLUSIONS: We conclude that budgerigars use visual edges to target and guide landings. Calculations of photoreceptor excitation reveal that edge detection in landing budgerigars is performed by a color-blind luminance channel that sums the signals from the red and green photoreceptors, or, alternatively, receives input from the red double-cones. This finding has close parallels to vision in honeybees and primates, where edge detection and motion perception are also largely color-blind.
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    Focal Activation of Primary Visual Cortex Following Supra-choroidal Electrical Stimulation of the Retina: Intrinsic Signal Imaging and Linear Model Analysis
    Cloherty, SL ; Hietanen, MA ; Suaning, GJ ; Ibbotson, MR (IEEE, 2010)
    UNLABELLED: We performed optical intrinsic signal imaging of cat primary visual cortex (Area 17 and 18) while delivering bipolar electrical stimulation to the retina by way of a supra-choroidal electrode array. Using a general linear model (GLM) analysis we identified statistically significant (p < 0.01) activation in a localized region of cortex following supra-threshold electrical stimulation at a single retinal locus. OUR RESULTS: (1) demonstrate that intrinsic signal imaging combined with linear model analysis provides a powerful tool for assessing cortical responses to prosthetic stimulation, and (2) confirm that supra-choroidal electrical stimulation can achieve localized activation of the cortex consistent with focal activation of the retina.
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    Epiretinal Electrical Stimulation and the Inner Limiting Membrane in Rat Retina
    Cloherty, SL ; Wong, RCS ; Hadjinicolaou, AE ; Meffin, H ; Ibbotson, MR ; O'Brien, BJ (IEEE, 2012)
    In this paper we aim to quantify the effect of the inner limiting membrane (ILM) of the retina on the thresholds for epiretinal electrical stimulation of retinal ganglion cells by a microelectronic retinal prosthesis. A pair of bipolar stimulating electrodes was placed either above (on the epiretinal surface) or below the ILM while we made whole-cell patch-clamp recordings from retinal ganglion cells in an isolated rat retinal whole-mount preparation. Across our cell population we found no significant difference in the median threshold stimulus amplitudes when the stimulating electrodes were placed below as opposed to above the ILM (p = 0.08). However, threshold stimulus amplitudes did tend to be lower when the stimulating electrodes were placed below the ILM (30 µA vs 56 µA).
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    Retinal ganglion cells electrophysiology: the effect of cell morphology on impulse waveform
    Maturana, MI ; Wong, R ; Cloherty, SL ; Ibbotson, MR ; Hadjinicolaou, AE ; Grayden, DB ; Burkitt, AN ; Meffin, H ; O'Brien, BJ ; Kameneva, T (IEEE, 2013)
    There are 16 morphologically defined classes of rats retinal ganglion cells (RGCs). Using computer simulation of a realistic anatomically correct A1 mouse RGC, we investigate the effect of the cell's morphology on its impulse waveform, using the first-, and second-order time derivatives as well as the phase plot features. Using whole cell patch clamp recordings, we recorded the impulse waveform for each of the rat RGCs types. While we found some clear differences in many features of the impulse waveforms for A2 and B2 cells compared to other cell classes, many cell types did not show clear differences.
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    Visual Perception: Saccadic Omission - Suppression or Temporal Masking?
    Ibbotson, MR ; Cloherty, SL (CELL PRESS, 2009-06-23)
    Although we don't perceive visual stimuli during saccadic eye movements, new evidence shows that our brains do process these stimuli and they can influence our subsequent visual perception.
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    Saccadic Modulation of Neural Responses: Possible Roles in Saccadic Suppression, Enhancement, and Time Compression
    Ibbotson, MR ; Crowder, NA ; Cloherty, SL ; Price, NSC ; Mustari, MJ (SOC NEUROSCIENCE, 2008-10-22)
    Humans use saccadic eye movements to make frequent gaze changes, yet the associated full-field image motion is not perceived. The theory of saccadic suppression has been proposed to account for this phenomenon, but it is not clear whether suppression originates from a retinal signal at saccade onset or from the brain before saccade onset. Perceptually, visual sensitivity is reduced before saccades and enhanced afterward. Over the same time period, the perception of time is compressed and even inverted. We explore the origins and neural basis of these effects by recording from neurons in the dorsal medial superior temporal area (MSTd) of alert macaque monkeys. Neuronal responses to flashed presentations of a textured pattern presented at random times relative to saccades exhibit a stereotypical pattern of modulation. Response amplitudes are strongly suppressed for flashes presented up to 90 ms before saccades. Immediately after the suppression, there is a period of 200-450 ms in which flashes generate enhanced response amplitudes. Our results show that (1) MSTd is not directly suppressed, rather suppression is inherited from earlier visual areas; (2) early suppression of the visual system must be of extra-retinal origin; (3) postsaccadic enhancement of neural activity occurs in MSTd; and (4) the enhanced responses have reduced latencies. As a whole, these observations reveal response properties that could account for perceptual observations relating to presaccadic suppression, postsaccadic enhancement and time compression.
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    Effects of saccades on visual processing in primate MSTd
    Cloherty, SL ; Mustari, MJ ; Rosa, MGP ; Ibbotson, MR (PERGAMON-ELSEVIER SCIENCE LTD, 2010-12)
    In surveying their visual environment, primates, including humans make frequent rapid eye movements known as saccades. Saccades result in rapid motion of the retinal image and yet this motion is not perceived. We recorded saccade-related changes in neural activity in the dorsal medial superior temporal area (MSTd) of alert macaque monkeys. We show that the spontaneous activity of neurons in MSTd is modulated around the time of saccades. Some cells show considerable suppression of spontaneous activity, while most show early and significant enhancement. While this modulation of spontaneous activity is variable, the concomitant modulation of neural responses evoked by flashed visual stimuli is uniform and stereotypical - visual responses are suppressed for stimuli presented around the time of saccades and enhanced for stimuli presented afterwards. The combined modulation of spontaneous activity and evoked visual responses likely serves to reduce the detectability of peri-saccadic stimuli and promote the perceptual awareness of visual stimuli between saccades.
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    Differential changes in perceived contrast following contrast adaptation in humans
    Hietanen, MA ; Cloherty, SL ; Clifford, CWG ; Ibbotson, MR (PERGAMON-ELSEVIER SCIENCE LTD, 2010-01-11)
    Perceived contrast is reduced after prolonged exposure to a textured pattern (contrast adaptation). The size of this effect is dependent on the relationship between the adapting contrast and the test contrast. It is generally accepted that the greatest reductions occur when the adapting contrast is much higher than the test contrast. Here this relationship was examined for a wide range of spatial frequencies. The results show that the effect of the adapt/test ratio on perceived contrast following contrast adaptation is highly spatial frequency dependent. At high spatial frequencies >1cpd perceived contrast was reduced for all adapting contrasts, which is consistent with other studies. However, at low spatial frequencies (<1cpd) the perceived contrast was actually above veridical perception when the adapting contrast was lower than the test contrast. This finding has not been previously reported and has important implications for models of contrast perception.
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    PHASE SENSITIVITY OF COMPLEX CELLS IN PRIMARY VISUAL CORTEX
    Hietanen, MA ; Cloherty, SL ; van Kleef, JP ; Wang, C ; Dreher, B ; Ibbotson, MR (PERGAMON-ELSEVIER SCIENCE LTD, 2013-05-01)
    Neurons in the primary visual cortex are often classified as either simple or complex based on the linearity (or otherwise) of their response to spatial luminance contrast. In practice, classification is typically based on Fourier analysis of a cell's response to an optimal drifting sine-wave grating. Simple cells are generally considered to be linear and produce responses modulated at the fundamental frequency of the stimulus grating. In contrast, complex cells exhibit significant nonlinearities that reduce the response at the fundamental frequency. Cells can therefore be easily and objectively classified based on the relative modulation of their responses - the ratio of the phase-sensitive response at the fundamental frequency of the stimulus (F₁) to the phase-invariant sustained response (F₀). Cells are classified as simple if F₁/F₀>1 and complex if F₁/F₀<1. This classification is broadly consistent with criteria based on the spatial organisation of cells' receptive fields and is accordingly presumed to reflect disparate functional roles of simple and complex cells in coding visual information. However, Fourier analysis of spiking responses is sensitive to the number of spikes available - F₁/F₀ increases as the number of spikes is reduced, even for phase-invariant complex cells. Moreover, many complex cells encountered in the laboratory exhibit some phase sensitivity, evident as modulation of their responses at the fundamental frequency. There currently exists no objective quantitative means of assessing the significance or otherwise of these modulations. Here we derive a statistical basis for objectively assessing whether the modulation of neuronal responses is reliable, thereby adding a level of statistical certainty to measures of phase sensitivity. We apply our statistical analysis to neuronal responses to moving sine-wave gratings recorded from 367 cells in cat primary visual cortex. We find that approximately 60% of complex cells exhibit statistically significant (α<0.01) modulation of their responses to optimal moving gratings. These complex cells are phase sensitive and reliably encode spatial phase.