Microbiology & Immunology - Research Publications

Permanent URI for this collection

http://hdl.handle.net/11343/226

Filters

2012 - 2015 3
3
Reset filters

Settings
Statistics
Citations
Author: Simmons, Cameron × Author: Wong, Tien × End date: 2019 × Start date: 2010 ×

Search Results

Now showing 1 - 3 of 3
  • Item
    Thumbnail Image
    Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma
    Vithana, EN ; Khor, C-C ; Qiao, C ; Nongpiur, ME ; George, R ; Chen, L-J ; Tan, D ; Abu-Amero, KK ; Huang, CK ; Low, S ; Tajudin, L-SA ; Perera, SA ; Cheng, C-Y ; Xu, L ; Jia, H ; Ho, C-L ; Sim, KS ; Wu, R-Y ; Tham, CCY ; Chew, PTK ; Su, DH ; Oen, FT ; Sarangapani, S ; Soumittra, N ; Osman, EA ; Wong, H-T ; Tang, G ; Fan, S ; Meng, H ; Huong, DTL ; Wang, H ; Feng, B ; Baskaran, M ; Shantha, B ; Ramprasad, VL ; Kumaramanickavel, G ; Iyengar, SK ; How, AC ; Lee, KY ; Sivakumaran, TA ; Yong, VHK ; Ting, SML ; Li, Y ; Wang, Y-X ; Tay, W-T ; Sim, X ; Lavanya, R ; Cornes, BK ; Zheng, Y-F ; Wong, TT ; Loon, S-C ; Yong, VKY ; Waseem, N ; Yaakub, A ; Chia, K-S ; Allingham, RR ; Hauser, MA ; Lam, DSC ; Hibberd, ML ; Bhattacharya, SS ; Zhang, M ; Teo, YY ; Tan, DT ; Jonas, JB ; Tai, E-S ; Saw, S-M ; Do, NH ; Al-Obeidan, SA ; Liu, J ; Tran, NBC ; Simmons, CP ; Bei, J-X ; Zeng, Y-X ; Foster, PJ ; Vijaya, L ; Wong, T-Y ; Pang, C-P ; Wang, N ; Aung, T (NATURE PUBLISHING GROUP, 2012-10)
    Primary angle closure glaucoma (PACG) is a major cause of blindness worldwide. We conducted a genome-wide association study including 1,854 PACG cases and 9,608 controls across 5 sample collections in Asia. Replication experiments were conducted in 1,917 PACG cases and 8,943 controls collected from a further 6 sample collections. We report significant associations at three new loci: rs11024102 in PLEKHA7 (per-allele odds ratio (OR)=1.22; P=5.33×10(-12)), rs3753841 in COL11A1 (per-allele OR=1.20; P=9.22×10(-10)) and rs1015213 located between PCMTD1 and ST18 on chromosome 8q (per-allele OR=1.50; P=3.29×10(-9)). Our findings, accumulated across these independent worldwide collections, suggest possible mechanisms explaining the pathogenesis of PACG.
  • Item
    Thumbnail Image
    ABCC5, a Gene That Influences the Anterior Chamber Depth, Is Associated with Primary Angle Closure Glaucoma
    Nongpiur, ME ; Khor, CC ; Jia, H ; Cornes, BK ; Chen, L-J ; Qiao, C ; Nair, KS ; Cheng, C-Y ; Xu, L ; George, R ; Do, T ; Abu-Amero, K ; Perera, SA ; Ozaki, M ; Mizoguchi, T ; Kurimoto, Y ; Low, S ; Tajudin, L-SA ; Ho, C-L ; Tham, CCY ; Soto, I ; Chew, PTK ; Wong, H-T ; Shantha, B ; Kuroda, M ; Osman, EA ; Tang, G ; Fan, S ; Meng, H ; Wang, H ; Feng, B ; Yong, VHK ; Ting, SML ; Li, Y ; Wang, Y-X ; Li, Z ; Lavanya, R ; Wu, R-Y ; Zheng, Y-F ; Su, DH ; Loon, S-C ; Allingham, RR ; Hauser, MA ; Soumittra, N ; Ramprasad, VL ; Waseem, N ; Yaakub, A ; Chia, K-S ; Kumaramanickavel, G ; Wong, TT ; How, AC ; Tran, NBC ; Simmons, CP ; Bei, J-X ; Zeng, Y-X ; Bhattacharya, SS ; Zhang, M ; Tan, DT ; Teo, Y-Y ; Al-Obeidan, SA ; Do, NH ; Tai, E-S ; Saw, S-M ; Foster, PJ ; Vijaya, L ; Jonas, JB ; Wong, T-Y ; John, SWM ; Pang, C-P ; Vithana, EN ; Wang, N ; Aung, T ; Wiggs, JL (PUBLIC LIBRARY SCIENCE, 2014-03)
    Anterior chamber depth (ACD) is a key anatomical risk factor for primary angle closure glaucoma (PACG). We conducted a genome-wide association study (GWAS) on ACD to discover novel genes for PACG on a total of 5,308 population-based individuals of Asian descent. Genome-wide significant association was observed at a sequence variant within ABCC5 (rs1401999; per-allele effect size =  -0.045 mm, P = 8.17 × 10(-9)). This locus was associated with an increase in risk of PACG in a separate case-control study of 4,276 PACG cases and 18,801 controls (per-allele OR = 1.13 [95% CI: 1.06-1.22], P = 0.00046). The association was strengthened when a sub-group of controls with open angles were included in the analysis (per-allele OR = 1.30, P = 7.45 × 10(-9); 3,458 cases vs. 3,831 controls). Our findings suggest that the increase in PACG risk could in part be mediated by genetic sequence variants influencing anterior chamber dimensions.
  • Item
    Thumbnail Image
    A common variant near TGFBR3 is associated with primary open angle glaucoma
    Li, Z ; Allingham, RR ; Nakano, M ; Jia, L ; Chen, Y ; Ikeda, Y ; Mani, B ; Chen, L-J ; Kee, C ; Garway-Heath, DF ; Sripriya, S ; Fuse, N ; Abu-Amero, KK ; Huang, C ; Namburi, P ; Burdon, K ; Perera, SA ; Gharahkhani, P ; Lin, Y ; Ueno, M ; Ozaki, M ; Mizoguchi, T ; Krishnadas, SR ; Osman, EA ; Lee, MC ; Chan, ASY ; Tajudin, L-SA ; Do, T ; Goncalves, A ; Reynier, P ; Zhang, H ; Bourne, R ; Goh, D ; Broadway, D ; Husain, R ; Negi, AK ; Su, DH ; Ho, C-L ; Blanco, AA ; Leung, CKS ; Wong, TT ; Yakub, A ; Liu, Y ; Nongpiur, ME ; Han, JC ; Hon, DN ; Shantha, B ; Zhao, B ; Sang, J ; Zhang, N ; Sato, R ; Yoshii, K ; Panda-Jonas, S ; Koch, AEA ; Herndon, LW ; Moroi, SE ; Challa, P ; Foo, JN ; Bei, J-X ; Zeng, Y-X ; Simmons, CP ; Tran, NBC ; Sharmila, PF ; Chew, M ; Lim, B ; Tam, POS ; Chua, E ; Ng, XY ; Yong, VHK ; Chong, YF ; Meah, WY ; Vijayan, S ; Seongsoo, S ; Xu, W ; Teo, YY ; Bailey, JNC ; Kang, JH ; Haines, JL ; Cheng, CY ; Saw, S-M ; Tai, E-S ; Richards, JE ; Ritch, R ; Gaasterland, DE ; Pasquale, LR ; Liu, J ; Jonas, JB ; Milea, D ; George, R ; Al-Obeidan, SA ; Mori, K ; Macgregor, S ; Hewitt, AW ; Girkin, CA ; Zhang, M ; Sundaresan, P ; Vijaya, L ; Mackey, DA ; Wong, TY ; Craig, JE ; Sun, X ; Kinoshita, S ; Wiggs, JL ; Khor, C-C ; Yang, Z ; Pang, CP ; Wang, N ; Hauser, MA ; Tashiro, K ; Aung, T ; Vithana, EN (OXFORD UNIV PRESS, 2015-07-01)
    Primary open angle glaucoma (POAG), a major cause of blindness worldwide, is a complex disease with a significant genetic contribution. We performed Exome Array (Illumina) analysis on 3504 POAG cases and 9746 controls with replication of the most significant findings in 9173 POAG cases and 26 780 controls across 18 collections of Asian, African and European descent. Apart from confirming strong evidence of association at CDKN2B-AS1 (rs2157719 [G], odds ratio [OR] = 0.71, P = 2.81 × 10(-33)), we observed one SNP showing significant association to POAG (CDC7-TGFBR3 rs1192415, ORG-allele = 1.13, Pmeta = 1.60 × 10(-8)). This particular SNP has previously been shown to be strongly associated with optic disc area and vertical cup-to-disc ratio, which are regarded as glaucoma-related quantitative traits. Our study now extends this by directly implicating it in POAG disease pathogenesis.