Infrastructure Engineering - Research Publications
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ItemImproving the information content in soil pH maps: a case study(WILEY, 2017-09)Summary Uncertainties associated with legacy data contribute to the spatial uncertainty of predictions for soil properties such as pH. Examples of potential sources of error in maps of soil pH include temporal variation and changes in land use over time. Prediction of soil pH can be improved with a linear mixed model (LMM) to analyse factors that contribute to uncertainty. Probabilities from conditional simulations in combination with agronomic critical thresholds for acid‐sensitive species can be used to identify areas that are likely, or very likely, to be below these critical thresholds for plant production. Because of rapid changes in farming systems and management practices, there is a need to be vigilant in monitoring changes in soil acidification. This is because soil acidification is an important factor in primary production and soil sustainability. In this research, legacy data from south‐western Victoria (Australia) were used with model‐based geostatistics to produce a map of soil pH that accommodates a variety of error sources, such as the time of sampling, seasonal variation, differences in analytical method, effects of changes in land use and variable soil sample depth in legacy data. Spatial covariates that are representative of soil‐forming factors were used to improve predictions. To transform spatial prediction and estimates of error in soil pH into more informative and usable maps with more information content, simulations from the conditional distribution were used to compute the probability of a soil's pH being less than critical agronomic production thresholds at each of the prediction locations. These probabilities were mapped to reveal areas of potential risk. Highlights Can maps of soil pH be improved by accounting for temporal variation and change in land use? First example of taking account of temporal variability in sampling for pH in spatial models. Key factors for uncertainty in spatial prediction include time of sampling and sample depth. Accuracy improved by accounting for additional sources of error combined with conditional simulations.
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ItemEstimating global arthropod species richness: refining probabilistic models using probability bounds analysis(SPRINGER, 2013-02)A key challenge in the estimation of tropical arthropod species richness is the appropriate management of the large uncertainties associated with any model. Such uncertainties had largely been ignored until recently, when we attempted to account for uncertainty associated with model variables, using Monte Carlo analysis. This model is restricted by various assumptions. Here, we use a technique known as probability bounds analysis to assess the influence of assumptions about (1) distributional form and (2) dependencies between variables, and to construct probability bounds around the original model prediction distribution. The original Monte Carlo model yielded a median estimate of 6.1 million species, with a 90 % confidence interval of [3.6, 11.4]. Here we found that the probability bounds (p-bounds) surrounding this cumulative distribution were very broad, owing to uncertainties in distributional form and dependencies between variables. Replacing the implicit assumption of pure statistical independence between variables in the model with no dependency assumptions resulted in lower and upper p-bounds at 0.5 cumulative probability (i.e., at the median estimate) of 2.9-12.7 million. From here, replacing probability distributions with probability boxes, which represent classes of distributions, led to even wider bounds (2.4-20.0 million at 0.5 cumulative probability). Even the 100th percentile of the uppermost bound produced (i.e., the absolutely most conservative scenario) did not encompass the well-known hyper-estimate of 30 million species of tropical arthropods. This supports the lower estimates made by several authors over the last two decades.
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ItemIwao's patchiness regression through the origin: biological importance and efficiency of sampling applications(WILEY, 2014-04)Abstract Iwao's mean crowding‐mean density relation can be treated both as a linear function describing the biological characteristics of a species at a population level, or a regression model fitted to empirical data (Iwao's patchiness regression). In this latter form its parameters are commonly used to construct sampling plans for insect pests, which are characteristically patchily distributed or overdispersed. It is shown in this paper that modifying both the linear function and statistical model to force the intercept or lower functional limit through the origin results in more intuitive biological interpretation of parameters and better sampling economy. Firstly, forcing the function through the origin has the effect of ensuring that zero crowding occurs when zero individuals occupy a patch. Secondly, it ensures that negative values of the intercept, which do not yield an intuitive biological interpretation, will not arise. It is shown analytically that sequential sampling plans based on regression through the origin should be more efficient compared to plans based on conventional regression. For two overdispersed data sets, through‐origin based plans collected a significantly lower sample size during validation than plans based on conventional regression, but the improvement in sampling efficiency was not large enough to be of practical benefit. No difference in sample size was observed when through‐origin and conventional regression based plans were validated using underdispersed data. A field researcher wishing to adopt a through‐origin form of Iwao's regression for the biological reasons outlined above can therefore be confident that their sampling strategies will not be affected by doing so.
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ItemUncertainty Analysis of Mobile Phone Use and Its Effect on Cognitive Function: The Application of Monte Carlo Simulation in a Cohort of Australian Primary School Children.(MDPI, 2019-07-08)Previous epidemiological studies on health effects of radiation exposure from mobile phones have produced inconsistent results. This may be due to experimental difficulties and various sources of uncertainty, such as statistical variability, measurement errors, and model uncertainty. An analytical technique known as the Monte Carlo simulation provides an additional approach to analysis by addressing uncertainty in model inputs using error probability distributions, rather than point-source data. The aim of this investigation was to demonstrate using Monte Carlo simulation of data from the ExPOSURE (Examination of Psychological Outcomes in Students using Radiofrequency dEvices) study to quantify uncertainty in the output of the model. Data were collected twice, approximately one year apart (between 2011 and 2013) for 412 primary school participants in Australia. Monte Carlo simulation was used to estimate output uncertainty in the model due to uncertainties in the call exposure data. Multiple linear regression models evaluated associations between mobile phone calls with cognitive function and found weak evidence of an association. Similar to previous longitudinal analysis, associations were found for the Go/No Go and Groton maze learning tasks, and a Stroop time ratio. However, with the introduction of uncertainty analysis, the results were closer to the null hypothesis.
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ItemArtificial intelligence and Big Data in Public Health(Molecular Diversity Preservation International (MDPI) AG, 2018-12-10)Artificial intelligence and automation are topics dominating global discussions on the future of professional employment, societal change, and economic performance. In this paper, we describe fundamental concepts underlying AI and Big Data and their significance to public health. We highlight issues involved and describe the potential impacts and challenges to medical professionals and diagnosticians. The possible benefits of advanced data analytics and machine learning are described in the context of recently reported research. Problems are identified and discussed with respect to ethical issues and the future roles of professionals and specialists in the age of artificial intelligence.
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ItemRadiofrequency Electromagnetic Radiation and Memory Performance: Sources of Uncertainty in Epidemiological Cohort Studies(MDPI, 2018-04)Uncertainty in experimental studies of exposure to radiation from mobile phones has in the past only been framed within the context of statistical variability. It is now becoming more apparent to researchers that epistemic or reducible uncertainties can also affect the total error in results. These uncertainties are derived from a wide range of sources including human error, such as data transcription, model structure, measurement and linguistic errors in communication. The issue of epistemic uncertainty is reviewed and interpreted in the context of the MoRPhEUS, ExPOSURE and HERMES cohort studies which investigate the effect of radiofrequency electromagnetic radiation from mobile phones on memory performance. Research into this field has found inconsistent results due to limitations from a range of epistemic sources. Potential analytic approaches are suggested based on quantification of epistemic error using Monte Carlo simulation. It is recommended that future studies investigating the relationship between radiofrequency electromagnetic radiation and memory performance pay more attention to treatment of epistemic uncertainties as well as further research into improving exposure assessment. Use of directed acyclic graphs is also encouraged to display the assumed covariate relationship.
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ItemQuantification of Uncertainty in Mathematical Models: The Statistical Relationship between Field and Laboratory pH Measurements(Hindawi Publishing Corporation, 2017)The measurement of soil pH using a field portable test kit represents a fast and inexpensive method to assess pH. Field based pH methods have been used extensively for agricultural advisory services and soil survey and now for citizen soil science projects. In the absence of laboratory measurements, there is a practical need to model the laboratory pH as a function of the field pH to increase the density of data for soil research studies and Digital Soil Mapping. The accuracy and uncertainty in pH field measurements were investigated for soil samples from regional Victoria in Australia using both linear and sigmoidal models. For samples in water and CaCl2 at 1 : 5 dilutions, sigmoidal models provided improved accuracy over the full range of field pH values in comparison to linear models (i.e., pH < 5 or pH > 9). The uncertainty in the field results was quantified by the 95% confidence interval (CI) and 95% prediction interval (PI) for the models, with 95% CI < 0.25 pH units and 95% PI = ±1.3 pH units, respectively. It was found that the Pearson criterion for robust regression analysis can be considered as an alternative to the orthodox least-squares modelling approach because it is more effective in addressing outliers in legacy data.
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