School of Chemistry - Research Publications
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ItemNo Preview AvailableFingerprints of Chalcogen Bonding Revealed Through 77Se-NMR.(Wiley, 2024-03-20)77Se-NMR is used to characterise several chalcogen bonded complexes of derivatives of the organoselenium drug ebselen, exploring a range of electron demand. NMR titration experiments support the intuitive understanding that chalcogen bond donors bearing more electron withdrawing substituents give rise stronger chalcogen bonds. The chemical shift of the selenium nucleus is also shown to move upfield as it participates in a chalcogen bond. Solid-state NMR is used to explore chalcogen bonding in co-crystals. Due to the lack of molecular reorientation on the NMR timescale in the solid state, the shape of the chemical shift tensor can be determined using this technique. A range of co-crystals are shown to have extremely large chemical shift anisotropy, which suggests a strongly anisotropic electron density distribution around the selenium atom. A single crystal NMR experiment was conducted using one of the co-crystals, affording the absolute orientation of the chemical shift tensor within the crystal. This showed that the selenium nucleus is strongly shielded in the direction of the chalcogen bond (due to the approach of the lone pair of the Lewis base), and strongly deshielded in the perpendicular direction. The orientation of the deshielded axis is consistent with the presence of a second σ-hole which is not participating in a chalcogen bond, showing the profound effect of electron density anisotropy on the chemical shift.
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ItemNo Preview AvailableDefining the molecular architecture, metal dependence, and distribution of metal-dependent class II sulfofructose-1-phosphate aldolases( 2023-08-08)Sulfoquinovose (SQ or 6-deoxy-6-sulfoglucose) is a sulfosugar that is the anionic head group of plant and cyanobacterial sulfolipids: sulfoquinovosyl diacylglycerols. SQ is produced within photosynthetic tissues, forms a major terrestrial reservoir of biosulfur, and is an important species within the biogeochemical sulfur cycle. A major pathway for the breakdown of SQ is the sulfoglycolytic Embden-Meyerhof-Parnas (sulfo-EMP) pathway, which involves cleavage of the 6-carbon chain of the intermediate sulfofructose-1-phosphate (SFP) into dihydroxyacetone and sulfolactaldehyde, catalyzed by class I or II SFP aldolases. While the molecular basis of catalysis is well studied for class I SFP aldolases, comparatively little is known about class II SFP aldolases. Here, we report the molecular architecture and biochemical basis of catalysis of two metal-dependent class II SFP aldolases from Hafnia paralvei and Yersinia aldovae. 3D X-ray structures in complex with the substrate SFP and product DHAP reveal a dimer-of-dimers (tetrameric) assembly, and identify the sulfonate binding pocket that defines the substrate specificity of these enzymes, two metal binding sites, and flexible loops that are implicated in catalysis. Both enzymes were metal dependent and exhibited high KM values for SFP, consistent with their role in a unidirectional nutrient acquisition pathway. Bioinformatic analysis identified a range of sulfo-EMP gene clusters containing class I/II SFP aldolases. The class I and II SFP aldolases occur exclusively within Actinobacteria and Firmicutes phyla, respectively, while both classes of enzyme occur within Proteobacteria. This work emphasizes the importance of SQ as a nutrient for diverse bacterial phyla and the different chemical strategies they use to harvest carbon from this sulfosugar.
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ItemSpectroscopic study of L-DOPA and dopamine binding on novel gold nanoparticles towards more efficient drug-delivery system for Parkinson's disease(PERGAMON-ELSEVIER SCIENCE LTD, 2022-03-05)Nano-drug delivery systems may potentially overcome current challenges in the treatment of Parkinson's disease (PD) by enabling targeted delivery and more efficient blood-brain penetration ability. This study investigates novel gold nanoparticles (AuNPs) to be used as delivery systems for L-DOPA and dopamine by considering their binding capabilities in the presence and absence of a model protein, bovine serum albumin (BSA). Four different AuNPs were prepared by surface functionalization with polyethylene glycol (PEG), 1-adamantylamine (Ad), 1-adamantylglycine (AdGly), and peptidoglycan monomer (PGM). Fluorescence and UV-Vis measurements demonstrated the strongest binding affinity and L-DOPA/dopamine loading efficiency for PGM-functionalized AuNPs with negligible impact of the serum protein presence. Thermodynamic analysis revealed a spontaneous binding process between L-DOPA or dopamine and AuNPs that predominantly occurred through van der Waals interactions/hydrogen bonds or electrostatic interactions. These results represent PGM-functionalized AuNPs as the most efficient at L-DOPA and dopamine binding with a potential to become a drug-delivery system for neurodegenerative diseases. Detailed investigation of L-DOPA/dopamine interactions with different AuNPs was described here for the first time. Moreover, this study highlights a cost- and time-effective methodology for evaluating drug binding to nanomaterials.
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ItemSynthesis and Characterisation of Helicate and Mesocate Forms of a Double-Stranded Diruthenium(ii) Complex of a Di(terpyridine) Ligand(CSIRO Publishing, 2019)A diruthenium(II) complex involving the di(terpyridine) ligand 1,2-bis{5-(5″-methyl-2,2′:6′,2″-terpyridinyl)}ethane was synthesised by heating an equimolar ratio of RuCl3 and the ligand under reflux conditions in ethylene glycol for 3 days, realising double-stranded helicate and mesocate forms which were chromatographically separated. The two species were obtained in relatively low yield (each ~7–9 %) from the reaction mixture. X-Ray structural studies revealed differences in the cavity sizes of the two structures, with the helicate structure having a significantly smaller cavity. Furthermore, the helicate and mesocate forms pack with notably different arrangements of the structures with the helicate having large solvent and anion filled pores. 1D/2D NMR studies revealed rigidity in the mesocate structure relative to that of the helicate, such that the –CH2CH2– signal was split in the former and appeared as a singlet in the latter. In a manner analogous to the behaviour of the parent [Ru(tpy)2]2+ coordination moiety (tpy = 2,2′:6′,2″-terpyridine), photophysical studies indicated that both the helicate and mesocate forms were non-emissive at ~610 nm at room temperature, but at 77 K in n-butyronitrile, both isomers showed emission at ~610 nm (λex 472 nm). However, the temporal emission characteristics were very different: time-resolved studies showed the emission of the helicate species decayed with a dominant emission lifetime of ~10 μs (similar to the emissive properties of free [Ru(tpy)2]2+ under the same conditions), whereas for the mesocate the emission lifetime was at least three orders of magnitude lower (~4 ns).
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ItemLow-Bandgap Conjugated Polymer Dots for Near-Infrared Fluorescence Imaging(AMER CHEMICAL SOC, 2018-09)Low-bandgap conjugated polymers attract significant research interests because of their broad light absorption spectra in the red and near-infrared regions, making them desirable materials for solar photovoltaics. To date, low-bandgap conjugated polymers yield some of the best power conversion efficiencies offered by polymer solar cells. In addition to their applications as solar photovoltaic materials, nanoparticles of these polymers may be potentially beneficial for cell imaging because of their red and near-infrared absorption features, which are required for significant light penetration into biological samples. In this work, conjugated polymer dots (CPdots) of PCPDTBT, PSBTBT, PTB7, PCDTBT, and PBDTTPD are prepared in aqueous solution using nanoprecipitation. The maximum fluorescence wavelengths of these CPdots range from 800 to 1000 nm. The CPdots exhibit an average zeta potential of -30 mV, giving rise to colloidal stability of these nanoparticles. Dynamic light scattering results show that the CPdots have a hydrodynamic diameter of approximately 100 nm. Furthermore, analyses of atomic force microscopy images of the low-bandgap donor-acceptor CPdots show an average height of approximately 20 nm. The CPdots are introduced to live THP-1 cells, a human monocytic cell line, and the internalization of CPdots by these cells is observed. Confocal fluorescence microscopy images of cells labeled with the low-bandgap CPdots show the presence of these bright nanoparticles in the cells. In short, we demonstrate the preparation of low-bandgap CPdots as an aqueous dispersion and their applications in cell imaging.
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ItemPhotophysical and Fluorescence Anisotropic Behavior of Polyfluorene β-Conformation Films(AMER CHEMICAL SOC, 2018-01-18)We demonstrate a systematic visualization of the unique photophysical and fluorescence anisotropic properties of polyfluorene coplanar conformation (β-conformation) using time-resolved scanning confocal fluorescence imaging (FLIM) and fluorescence anisotropy imaging microscopy (FAIM) measurements. We observe inhomogeneous morphologies and fluorescence decay profiles at various micrometer-sized regions within all types of polyfluorene β-conformational spin-coated films. Poly(9,9-dioctylfluorene-2,7-diyl) (PFO) and poly[4-(octyloxy)-9,9-diphenylfluoren-2,7-diyl]-co-[5-(octyloxy)-9,9-diphenylfluoren-2,7-diyl] (PODPF) β-domains both have shorter lifetime than those of the glassy conformation for the longer effective conjugated length and rigid chain structures. Besides, β-conformational regions have larger fluorescence anisotropy for the low molecular rotational motion and high chain orientation, while the low anisotropy in glassy conformational regions shows more rotational freedom of the chain and efficient energy migration from amorphous regions to β-conformation as a whole. Finally, ultrastable ASE threshold in the PODPF β-conformational films also confirms its potential application in organic lasers. In this regard, FLIM and FAIM measurements provide an effective platform to explore the fundamental photophysical process of conformational transitions in conjugated polymer.
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ItemNo Preview AvailableA simple and ubiquitous device for picric acid detection in latent fingerprints using carbon dots(Royal Society of Chemistry, 2020-05-07)This work addresses the synthetic optimization of carbon dots (CDs) and their application in sensing picric acid from latent fingerprints by exploiting a smartphone-based RGB tool. The optimization of the synthesis of CDs is investigated towards achieving shorter reaction time, better product yield and fluorescence quantum efficiency. Precursors such as citric acid and thiourea were chosen for the synthesis of CDs. Among the various synthetic methodologies, it is found that the pyrolysis method offers ∼50% product yield within 15 min. The morphology and optical properties of the prepared CDs are characterized using the typical microscopic and spectroscopic techniques, respectively. The synthesized CDs exhibit quasi-spherical shape with an average particle size of 1.7 nm. The excitation dependent emissive properties of CDs are investigated by time resolved fluorescence spectroscopy. Furthermore, the excellent fluorescence properties (ϕ = 11%) of CDs are explored as a fluorescent fingerprint powder for the identification of latent fingerprints on various substrates. In addition, the presence of picric acid in latent fingerprints was detected. Furthermore, this study is extended to perform real time detection of fingerprints and harmful contaminants in fingerprints by utilizing a smartphone-based RGB color analysis tool. Based on these investigations, the prepared CDs could be a prospective fluorescent material in the field of forensics.
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ItemSurface Lattice Resonances in Self-Assembled Gold Nanoparticle Arrays: Impact of Lattice Period, Structural Disorder, and Refractive Index on Resonance Quality(American Chemical Society, 2020-11-17)Surface lattice resonances are optical resonances composed of hybridized plasmonic and diffractive modes. These collective resonances occur in periodic arrays of plasmonic nanoparticles with wavelength-scale interparticle distances. The appearance and strength of surface lattice resonances strongly depend on the single particle localized surface plasmon resonance and its spectral overlap with the diffractive modes of the array. Coupling to in-plane orders of diffraction is also strongly affected by the refractive index environment and its symmetry. In this work, we address the impact of the interparticle distance, the symmetry of the refractive index environment, and structural imperfections in self-assembled colloidal monolayers on the plasmonic–diffractive coupling. For this purpose, we prepared hexagonally ordered, nonclose packed monolayers of gold nanoparticles using a fast and efficient, interface-mediated, colloidal self-assembly approach. By tuning the thickness and deformability of the polymer shells, we were able to prepare monolayers with a broad range of interparticle distances. The optical properties of the samples were studied experimentally by UV–Vis spectroscopy and theoretically by finite difference time domain simulations. The measured and simulated spectra allow a comprehensive analysis of the details of electromagnetic coupling in periodic plasmonic arrays. In particular, we identify relevant criteria required for surface lattice resonances in the visible wavelength range with optimized quality factors in self-assembled monolayers.
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ItemSedimentation of C60 and C70: Testing the Limits of Stokes' Law(AMER CHEMICAL SOC, 2018-11-01)Virtually all dynamic methods for determining particle size on the nanoscale use the Stokes-Einstein-Sutherland (SES) equation to convert the diffusion coefficient into a hydrodynamic radius. The validity of this equation on the nanoscale has not been rigorously validated by experiment. Here we measure the sedimentation rates and diffusion coefficients of C60 and C70 in toluene using analytical ultracentrifugation and compare the results to the SES equation. We find that the SES equation for the drag force (nonslip boundary condition) works down to 1 nm length scales.
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ItemFabrication of a Three-Dimensional Plasmon Ruler Using an Atomic Force Microscope(AMER CHEMICAL SOC, 2019-08-15)We have assembled a three-dimensional (3D) plasmon ruler using an atomic force microscope (AFM) tip to manipulate single gold nanocrystals on top of electron beam lithography fabricated base layers. The 3D structures exhibit several polarization-dependent surface plasmon scattering peaks, including symmetric and asymmetric Fano resonances. We map these resonances as a function of the degree of asymmetry of the structure. We show that the coupled surface plasmon resonances are extremely sensitive to the position of the upper particle and that the resonances can be engineered and tuned using an AFM tip to move the upper nanocrystal just a few Angstroms.