School of Agriculture, Food and Ecosystem Sciences - Research Publications

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    Red hot frogs: identifying the Australian frogs most at risk of extinction
    Geyle, HM ; Hoskin, CJ ; Bower, DS ; Catullo, R ; Clulow, S ; Driessen, M ; Daniels, K ; Garnett, ST ; Gilbert, D ; Heard, GW ; Hero, J-M ; Hines, HB ; Hoffmann, EP ; Hollis, G ; Hunter, DA ; Lemckert, F ; Mahony, M ; Marantelli, G ; McDonald, KR ; Mitchell, NJ ; Newell, D ; Roberts, JD ; Scheele, BC ; Scroggie, M ; Vanderduys, E ; Wassens, S ; West, M ; Woinarski, JCZ ; Gillespie, GR (CSIRO PUBLISHING, 2022)
    More than a third of the world’s amphibian species are listed as Threatened or Extinct, with a recent assessment identifying 45 Australian frogs (18.4% of the currently recognised species) as ‘Threatened’ based on IUCN criteria. We applied structured expert elicitation to 26 frogs assessed as Critically Endangered and Endangered to estimate their probability of extinction by 2040. We also investigated whether participant experience (measured as a self-assigned categorical score, i.e. ‘expert’ or ‘non-expert’) influenced the estimates. Collation and analysis of participant opinion indicated that eight species are at high risk (>50% chance) of becoming extinct by 2040, with the disease chytridiomycosis identified as the primary threat. A further five species are at moderate–high risk (30–50% chance), primarily due to climate change. Fourteen of the 26 frog species are endemic to Queensland, with many species restricted to small geographic ranges that are susceptible to stochastic events (e.g. a severe heatwave or a large bushfire). Experts were more likely to rate extinction probability higher for poorly known species (those with <10 experts), while non-experts were more likely to rate extinction probability higher for better-known species. However, scores converged following discussion, indicating that there was greater consensus in the estimates of extinction probability. Increased resourcing and management intervention are urgently needed to avert future extinctions of Australia’s frogs. Key priorities include developing and supporting captive management and establishing or extending in-situ population refuges to alleviate the impacts of disease and climate change.
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    The conservation impacts of ecological disturbance: Time-bound estimates of population loss and recovery for fauna affected by the 2019-2020 Australian megafires
    Legge, S ; Rumpff, L ; Woinarski, JCZ ; Whiterod, NS ; Ward, M ; Southwell, DG ; Scheele, BC ; Nimmo, DG ; Lintermans, M ; Geyle, HM ; Garnett, ST ; Hayward-Brown, B ; Ensbey, M ; Ehmke, G ; Ahyong, ST ; Blackmore, CJ ; Bower, DS ; Brizuela-Torres, D ; Burbidge, AH ; Burns, PA ; Butler, G ; Catullo, R ; Chapple, DG ; Dickman, CR ; Doyle, KE ; Ferris, J ; Fisher, D ; Gallagher, R ; Gillespie, GR ; Greenlees, MJ ; Hohnen, R ; Hoskin, CJ ; Hunter, D ; Jolly, C ; Kennard, M ; King, A ; Kuchinke, D ; Law, B ; Lawler, I ; Lawler, S ; Loyn, R ; Lunney, D ; Lyon, J ; MacHunter, J ; Mahony, M ; Mahony, S ; McCormack, RB ; Melville, J ; Menkhorst, P ; Michael, D ; Mitchell, N ; Mulder, E ; Newell, D ; Pearce, L ; Raadik, TA ; Rowley, JJL ; Sitters, H ; Spencer, R ; Valavi, R ; West, M ; Wilkinson, DP ; Zukowski, S ; Nolan, R (WILEY, 2022-10-01)
    Aim: After environmental disasters, species with large population losses may need urgent protection to prevent extinction and support recovery. Following the 2019–2020 Australian megafires, we estimated population losses and recovery in fire-affected fauna, to inform conservation status assessments and management. Location: Temperate and subtropical Australia. Time period: 2019–2030 and beyond. Major taxa: Australian terrestrial and freshwater vertebrates; one invertebrate group. Methods: From > 1,050 fire-affected taxa, we selected 173 whose distributions substantially overlapped the fire extent. We estimated the proportion of each taxon’s distribution affected by fires, using fire severity and aquatic impact mapping, and new distribution mapping. Using expert elicitation informed by evidence of responses to previous wildfires, we estimated local population responses to fires of varying severity. We combined the spatial and elicitation data to estimate overall population loss and recovery trajectories, and thus indicate potential eligibility for listing as threatened, or uplisting, under Australian legislation. Results: We estimate that the 2019–2020 Australian megafires caused, or contributed to, population declines that make 70–82 taxa eligible for listing as threatened; and another 21–27 taxa eligible for uplisting. If so-listed, this represents a 22–26% increase in Australian statutory lists of threatened terrestrial and freshwater vertebrates and spiny crayfish, and uplisting for 8–10% of threatened taxa. Such changes would cause an abrupt worsening of underlying trajectories in vertebrates, as measured by Red List Indices. We predict that 54–88% of 173 assessed taxa will not recover to pre-fire population size within 10 years/three generations. Main conclusions: We suggest the 2019–2020 Australian megafires have worsened the conservation prospects for many species. Of the 91 taxa recommended for listing/uplisting consideration, 84 are now under formal review through national processes. Improving predictions about taxon vulnerability with empirical data on population responses, reducing the likelihood of future catastrophic events and mitigating their impacts on biodiversity, are critical.
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    A national-scale dataset for threats impacting Australia's imperiled flora and fauna
    Ward, M ; Carwardine, J ; Yong, CJ ; Watson, JEM ; Silcock, J ; Taylor, GS ; Lintermans, M ; Gillespie, GR ; Garnett, ST ; Woinarski, J ; Tingley, R ; Fensham, RJ ; Hoskin, CJ ; Hines, HB ; Roberts, JD ; Kennard, MJ ; Harvey, MS ; Chapple, DG ; Reside, AE (WILEY, 2021-09)
    Australia is in the midst of an extinction crisis, having already lost 10% of terrestrial mammal fauna since European settlement and with hundreds of other species at high risk of extinction. The decline of the nation's biota is a result of an array of threatening processes; however, a comprehensive taxon-specific understanding of threats and their relative impacts remains undocumented nationally. Using expert consultation, we compile the first complete, validated, and consistent taxon-specific threat and impact dataset for all nationally listed threatened taxa in Australia. We confined our analysis to 1,795 terrestrial and aquatic taxa listed as threatened (Vulnerable, Endangered, or Critically Endangered) under Australian Commonwealth law. We engaged taxonomic experts to generate taxon-specific threat and threat impact information to consistently apply the IUCN Threat Classification Scheme and Threat Impact Scoring System, as well as eight broad-level threats and 51 subcategory threats, for all 1,795 threatened terrestrial and aquatic threatened taxa. This compilation produced 4,877 unique taxon-threat-impact combinations with the most frequently listed threats being Habitat loss, fragmentation, and degradation (n = 1,210 taxa), and Invasive species and disease (n = 966 taxa). Yet when only high-impact threats or medium-impact threats are considered, Invasive species and disease become the most prevalent threats. This dataset provides critical information for conservation action planning, national legislation and policy, and prioritizing investments in threatened species management and recovery.
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    Investigating the effects of fire management on savanna biodiversity with grid-based spatially explicit population simulations
    Davies, HF ; Visintin, C ; Gillespie, GR ; Murphy, BP ; Wainwright, C (WILEY, 2021-03)
    Abstract The development of effective fire management for biodiversity conservation is a global challenge. The highly dynamic nature of fire, the difficulty in replicating ‘real‐world’ fire experiments and the need to understand population changes at large spatiotemporal scales make computer simulations particularly useful for identifying optimal fire management regimes for biodiversity conservation. We aimed to develop a flexible modelling approach with which to investigate how the spatiotemporal application of fire (i.e. management scenarios) influences savanna biodiversity. We used existing data from a landscape‐scale fire experiment to develop population simulations for the common brushtail possumTrichosurus vulpecula, grassland melomysMelomys burtoniand northern brown bandicootIsoodon macrourusacross the Kapalga area of Kakadu National Park in northern Australia. We simulated how populations were expected to change between 1995 and 2015 in response to the fire patterns observed at Kapalga over this period, and under a hypothetical management scenario of extensive prescribed burning. Our models predicted a substantial decline in all three species in response to the observed fire regime at Kapalga, suggesting that the fire patterns observed at Kapalga, with the associated mechanisms and interactions with other ecological processes, were not conducive with the persistence of native mammal populations. Our prescribed burning scenario had little effect on the predicted population trajectory of the common brushtail possum and grassland melomys, but markedly improved the population trajectory of the northern brown bandicoot. These inconsistencies highlight the need for a nuanced approach to fire management across northern Australian savannas, that is tailored to local conditions and management objectives. Synthesis and applications. The modelling approach outlined here provides a basis for identifying fire patterns that are beneficial for conserving biodiversity, thereby increasing our capacity to establish clear targets for prescribed fire management. Importantly, this approach is flexible and can be easily adapted to other taxa and fire‐prone ecosystems.