School of Agriculture, Food and Ecosystem Sciences - Research Publications
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ItemNo Preview AvailableIndigenous Knowledge of seasons delivers a new way of considering annual cycles in atmospheric dispersion of pollutants(CSIRO Publishing, 2023-01-01)Poor air quality is recognised as the most important environmental health issue of our time. Meteorological variables like temperature and wind speed can strongly influence air quality and these variables often show clear annual cycles. It is therefore common to analyse atmospheric pollutants within a seasonal framework. However, the commonly used seasons in Australia do not align well with all of the most important annual weather patterns that influence air quality in the Sydney Basin. We used Indigenous perspectives on ‘seasons’ as identified by the co-authors and combined these with statistical analysis of the local climatology. This enabled us to create a set of locally informed ‘quasi-seasons’ that we named IKALC-seasons (Indigenous Knowledge Applied to Local Climatology). Engaging with the IKALC-seasons improved our understanding of temporal variability of air pollution in western Sydney, mainly due to a better identification of the time of year when cold, still weather conditions result in higher levels of fine particulate pollution, carbon monoxide and nitrogen oxides. Although the IKALC seasons identified in this study are intrinsically local in nature, the methodology developed has broadscale application. This approach can be used to identify the times of year when micrometeorological conditions are most likely to drive poor air quality thereby helping to inform effective decision-making about emission controls.
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ItemIs there an inherent conflict in managing fire for people and conservation?(CSIRO PUBLISHING, 2017)Wildfires are a natural disturbance in many ecosystems, creating challenges for land management agencies who need to simultaneously reduce risk to people and maintain ecological values. Here we use the PHOENIX RapidFire fire behaviour simulator to compare fuel treatment strategies that meet the twin objectives of reducing wildfire risk to human settlements and a fire sensitive endangered species, the koala (Phascolarctos cinereus) in south-eastern Australia. The local koala population is in decline and a conservation management plan is being prepared to exclude wildfire for a 10-year period to assist with population recovery. Twelve scenarios developed by the land management agencies were compared using four indicators: wildfire size; burn probability; impact from exposure to fire; and treatment cost. Compared with the current risk setting, three treatment scenarios were found to reduce wildfire size and burn probability concurrently to both people and koalas. These strategies worked by increasing the landscape area treated, which came with increased financial cost. However, the impact from exposure to fire for both property and koala habitat remains high. Additional complementary strategies beyond landscape fuel reductions are needed to reduce impact from exposure in the event of a wildfire.
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ItemBuilding capacity for estimating fire emissions from tropical peatlands; a worked example from Indonesia(NATURE PORTFOLIO, 2023-09-01)Tropical peatlands are globally significant in the terrestrial carbon cycle as they are comprised of a large forest carbon sink and a large peat carbon store-both of which can potentially be exchanged with the atmosphere on decadal time frames. Greenhouse gas emissions from fire-disturbance and development of tropical peatlands over the last few decades, and the potential for ongoing emissions, highlights the need for policy to slow or halt emissions and to activate mechanisms to sequester carbon through restoration of degraded peatlands. The UN REDD + scheme provides a means for developing countries to receive payments for avoided deforestation and forest degradation, but the steps to achieve REDD+ compliance are rigorous and the details required can be a barrier to activating benefits-especially for peatlands where repeated cycles of fire interrupt forest recovery and create a range of recovery classes. Therefore, to improve estimates of peat fire emissions and of carbon balance of tropical peatlands, the biomass and combustion factor parameters need to be developed and applied according to forest recovery stage. In this study we use published activity data from the extensive 1997 fires in the peatlands of Indonesian Borneo to detail a transparent and accountable way to estimate and report emissions from tropical peatland fires. This example for estimating and reporting emissions is provided to assist REDD+ countries to efficiently develop their capacity for improving emissions estimates from fire-impacted tropical peatlands.
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ItemSelenoproteins in Health(MDPI, 2024-01)Selenium (Se) is a naturally occurring essential micronutrient that is required for human health. The existing form of Se includes inorganic and organic. In contrast to the inorganic Se, which has low bioavailability and high cytotoxicity, organic Se exhibits higher bioavailability, lower toxicity, and has a more diverse composition and structure. This review presents the nutritional benefits of Se by listing and linking selenoprotein (SeP) functions to evidence of health benefits. The research status of SeP from foods in recent years is introduced systematically, particularly the sources, biochemical transformation and speciation, and the bioactivities. These aspects are elaborated with references for further research and utilization of organic Se compounds in the field of health.
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ItemOptimal allocation of resources among general and species-specific tools for plant pest biosecurity surveillance(WILEY, 2024-04)This paper proposes a surveillance model for plant pests that can optimally allocate resources among survey tools with varying properties. While some survey tools are highly specific for the detection of a single pest species, others are more generalized. There is considerable variation in the cost and sensitivity of these tools, but there are no guidelines or frameworks for identifying which tools are most cost-effective when used in surveillance programs that target the detection of newly invaded populations. To address this gap, we applied our model to design a trapping surveillance program in New Zealand for bark- and wood-boring insects, some of the most serious forest pests worldwide. Our findings show that exclusively utilizing generalized traps (GTs) proves to be highly cost-effective across a wide range of scenarios, particularly when they are capable of capturing all pest species. Implementing surveillance programs that only employ specialized traps (ST) is cost-effective only when these traps can detect highly damaging pests. However, even in such cases, they significantly lag in cost-effectiveness compared to GT-only programs due to their restricted coverage. When both GTs and STs are used in an integrated surveillance program, the total expected cost (TEC) generally diminishes when compared to programs relying on a single type of trap. However, this relative reduction in TEC is only marginally larger than that achieved with GT-only programs, as long as highly damaging species can be detected by GTs. The proportion of STs among the optimal required traps fluctuates based on several factors, including the relative pricing of GTs and STs, pest arrival rates, potential damage, and, more prominently, the coverage capacity of GTs. Our analysis suggests that deploying GTs extensively across landscapes appears to be more cost-effective in areas with either very high or very low levels of relative risk density, potential damage, and arrival rate. Finally, STs are less likely to be required when the pests that are detected by those tools have a higher likelihood of successful eradication because delaying detection becomes less costly for these species.
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ItemEcological factors influencing invasive predator survival and movement: insights from a continental-scale study of feral cats in Australia(SPRINGER, 2024-05-01)Abstract Feral cats (Felis catus) pose a significant global threat to biodiversity, primarily through predation, disease and competition. A key gap in parameterizing models for improving management decisions for feral cat control relates to factors that drive feral cat survival and movement in the wild. Our study objective was to conduct the first continental-scale analysis of survival rates and displacement distances for feral cats. We collated data on 528 feral cats from telemetry studies in naturally-vegetated landscapes across Australia. Using Cox-proportional hazards models, we investigated the effects of sex, presence of larger predators (dingoes, Canis familiaris and introduced foxes, Vulpes vulpes), presence of introduced prey (rabbits, Oryctolagus cuniculus), body mass, landscape productivity and feral cat density on feral cat survival. We also analysed the effects of sex, body mass and landscape productivity on feral cat displacement using linear mixed model analysis. Feral cat survival was positively associated with presence of dingoes and increasing body mass, whereas there was no clear association between feral cat survival and sex, presence of rabbits, or cat density. Presence of foxes had a strong negative effect on feral cat survival, but the hazard ratio was associated with considerable uncertainty. Net displacement of male feral cats was nearly two times further than that of females, and the proportion of feral cats making long-distance movements was greater in landscapes with low productivity. Increasing body mass of feral cats was positively related to net displacement, with heavier cats moving further. Analysis of metadata from telemetry studies can provide valuable insights into wildlife survival rates and movement behaviour. Our findings will help inform the development of effective management strategies and improve feral cat management for biodiversity conservation.
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ItemTotal metagenomes outperform viromes in recovering viral diversity from sulfuric soils(SPRINGERNATURE, 2024-01-08)Recent metagenomic advancements have offered unprecedented insights into soil viral ecology. However, it remains a challenge to select the suitable metagenomic method for investigating soil viruses under different environmental conditions. Here, we assessed the performance of viral size-fraction metagenomes (viromes) and total metagenomes in capturing viral diversity from hypersulfidic soils with neutral pH and sulfuric soils with pH <3.3. Viromes effectively enhanced the sequencing coverage of viral genomes in both soil types. Viomes of hypersulfidic soils outperformed total metagenomes by recovering a significantly higher number of viral operational taxonomic units (vOTUs). However, total metagenomes of sulfuric soils recovered ~4.5 times more vOTUs than viromes on average. Altogether, our findings suggest that the choice between viromes and total metagenomes for studying soil viruses should be carefully considered based on the specific environmental conditions.
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ItemIdentification and Evaluation of Olive Phenolics in the Context of Amine Oxidase Enzyme Inhibition and Depression: In Silico Modelling and In Vitro Validation(MDPI AG, )The Mediterranean diet well known for its beneficial health effects, including mood enhancement, is characterised by the relatively high consumption of extra virgin olive oil (EVOO), which is rich in bioactive phenolic compounds. Over 200 phenolic compounds have been associated with Olea europaea, and of these, only a relatively small fraction have been characterised. Utilising the OliveNetTM library, phenolic compounds were investigated as potential inhibitors of the epigenetic modifier lysine-specific demethylase 1 (LSD1). Furthermore, the compounds were screened for inhibition of the structurally similar monoamine oxidases (MAOs) which are directly implicated in the pathophysiology of depression. Molecular docking highlighted that olive phenolics interact with the active site of LSD1 and MAOs. Protein–peptide docking was also performed to evaluate the interaction of the histone H3 peptide with LSD1, in the presence of ligands bound to the substrate-binding cavity. To validate the in silico studies, the inhibitory activity of phenolic compounds was compared to the clinically approved inhibitor tranylcypromine. Our findings indicate that olive phenolics inhibit LSD1 and the MAOs in vitro. Using a cell culture model system with corticosteroid-stimulated human BJ fibroblast cells, the results demonstrate the attenuation of dexamethasone- and hydrocortisone-induced MAO activity by phenolic compounds. The findings were further corroborated using human embryonic stem cell (hESC)-derived neurons stimulated with all-trans retinoic acid. Overall, the results indicate the inhibition of flavin adenine dinucleotide (FAD)-dependent amine oxidases by olive phenolics. More generally, our findings further support at least a partial mechanism accounting for the antidepressant effects associated with EVOO and the Mediterranean diet.
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ItemPerformance of self-binding engineered panels made from sweet corn stalks (Zea mays L.) for furniture applications(Elsevier BV, 2024-02-01)Particleboard manufacturers face challenges with conventional adhesives and the shortage of wood particles. This research aims to offer an alternative to particleboard raw materials and investigates the physico-mechanical properties of particleboard made from sweet corn stalks (Zea mays L.) and citric acid (CA), with a focus on its suitability for furniture applications. The targeted density of particleboard was 0.7 g/cm3 and the CA solution addition was in the range of 0–25 wt%. The results show that the addition of 15 wt% CA increased the physico-mechanical properties of the panel. The physico-mechanical properties of particleboard with the addition of 25 wt% CA met the requirements of JIS A 5908 (2022). Py-GC/MS analysis of corn stalk particles shows 62 derivative compounds. The FTIR analysis confirms the formation of ester linkages between the carboxyl group of CA and hydroxyl groups of corn stalk.
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ItemThe global burden of adolescent and young adult cancer in 2019: a systematic analysis for the Global Burden of Disease Study 2019(ELSEVIER SCIENCE INC, 2022-01)BACKGROUND: In estimating the global burden of cancer, adolescents and young adults with cancer are often overlooked, despite being a distinct subgroup with unique epidemiology, clinical care needs, and societal impact. Comprehensive estimates of the global cancer burden in adolescents and young adults (aged 15-39 years) are lacking. To address this gap, we analysed results from the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2019, with a focus on the outcome of disability-adjusted life-years (DALYs), to inform global cancer control measures in adolescents and young adults. METHODS: Using the GBD 2019 methodology, international mortality data were collected from vital registration systems, verbal autopsies, and population-based cancer registry inputs modelled with mortality-to-incidence ratios (MIRs). Incidence was computed with mortality estimates and corresponding MIRs. Prevalence estimates were calculated using modelled survival and multiplied by disability weights to obtain years lived with disability (YLDs). Years of life lost (YLLs) were calculated as age-specific cancer deaths multiplied by the standard life expectancy at the age of death. The main outcome was DALYs (the sum of YLLs and YLDs). Estimates were presented globally and by Socio-demographic Index (SDI) quintiles (countries ranked and divided into five equal SDI groups), and all estimates were presented with corresponding 95% uncertainty intervals (UIs). For this analysis, we used the age range of 15-39 years to define adolescents and young adults. FINDINGS: There were 1·19 million (95% UI 1·11-1·28) incident cancer cases and 396 000 (370 000-425 000) deaths due to cancer among people aged 15-39 years worldwide in 2019. The highest age-standardised incidence rates occurred in high SDI (59·6 [54·5-65·7] per 100 000 person-years) and high-middle SDI countries (53·2 [48·8-57·9] per 100 000 person-years), while the highest age-standardised mortality rates were in low-middle SDI (14·2 [12·9-15·6] per 100 000 person-years) and middle SDI (13·6 [12·6-14·8] per 100 000 person-years) countries. In 2019, adolescent and young adult cancers contributed 23·5 million (21·9-25·2) DALYs to the global burden of disease, of which 2·7% (1·9-3·6) came from YLDs and 97·3% (96·4-98·1) from YLLs. Cancer was the fourth leading cause of death and tenth leading cause of DALYs in adolescents and young adults globally. INTERPRETATION: Adolescent and young adult cancers contributed substantially to the overall adolescent and young adult disease burden globally in 2019. These results provide new insights into the distribution and magnitude of the adolescent and young adult cancer burden around the world. With notable differences observed across SDI settings, these estimates can inform global and country-level cancer control efforts. FUNDING: Bill & Melinda Gates Foundation, American Lebanese Syrian Associated Charities, St Baldrick's Foundation, and the National Cancer Institute.