School of Agriculture, Food and Ecosystem Sciences - Research Publications

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    The role of climatic variability on Eucalyptus regeneration in southeastern Australia
    Singh, A ; Baker, PJ ; Kasel, S ; Trouve, R ; Stewart, SB ; Nitschke, CR (ELSEVIER, 2021-12)
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    The influence of spatial patterns in foraging habitat on the abundance and home range size of a vulnerable arboreal marsupial in southeast Australia
    Wagner, B ; Baker, PJ ; Nitschke, CR (WILEY, 2021-12)
    Abstract Wildlife can persist in a range of landscape configurations, but population densities can vary due to resource availability. Resources and environmental conditions shaping habitat suitability may be spatially dispersed or clumped, which can drive habitat availability. We explored how spatial configuration and aggregation of favorable feeding resources and climatic conditions affect populations of the greater glider (Petauroides volans), an arboreal marsupial in southeast Australia, vulnerable to climate change and disturbances. We hypothesized home‐range functionality from literature and field observations and used a generalized spatial framework based on neutral landscape models to test how spatial aggregation influences home‐range sizes and population structure. At the landscape scale, any decrease in climatic suitability also decreased potential population density, independent of the initial spatial configuration of the feeding landscape. At the stand scale however, the spatial configuration of feeding habitat drove population density. Dispersed resources required increased home‐range sizes for individual greater gliders to obtain feeding resources and resulted in smaller populations. Clumped resources supported larger populations, even when only small fractions of the stand contained feeding habitat. Disturbances to these resources could either retain populations or lead to extinction, depending on spatial aggregation and disturbance intensity. Increasingly severe dispersed disturbances caused potential home ranges to disappear more rapidly and remaining home ranges to become larger and contain less feeding habitat. The ability of greater gliders to establish populations and persist under disturbance was therefore highly dependent on the spatial aggregation of habitat resources and the type and severity of disturbance. Changes in climate act at a different scale and may override favorable habitat conditions at the stand level. Our results have implications for the conservation and retention of critical feeding habitat for greater gliders and provide insights into important factors to ensure population persistence under climate change and forest management.
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    Mapping canopy nitrogen-scapes to assess foraging habitat for a vulnerable arboreal folivore in mixed-species Eucalyptus forests
    Wagner, B ; Baker, PJ ; Moore, BD ; Nitschke, CR (WILEY, 2021-12)
    Herbivore foraging decisions are closely related to plant nutritional quality. For arboreal folivores with specialized diets, such as the vulnerable greater glider (Petauroides volans), the abundance of suitable forage trees can influence habitat suitability and species occurrence. The ability to model and map foliar nitrogen would therefore enhance our understanding of folivore habitat use at finer scales. We tested whether high-resolution multispectral imagery, collected by a lightweight and low-cost commercial unoccupied aerial vehicle (UAV), could be used to predict total and digestible foliar nitrogen (N and digN) at the tree canopy level and forest stand-scale from leaf-scale chemistry measurements across a gradient of mixed-species Eucalyptus forests in southeastern Australia. We surveyed temperate Eucalyptus forests across an elevational and topographic gradient from sea level to high elevation (50-1200 m a.s.l.) for forest structure, leaf chemistry, and greater glider occurrence. Using measures of multispectral leaf reflectance and spectral indices, we estimated N and digN and mapped N and favorable feeding habitat using machine learning algorithms. Our surveys covered 17 Eucalyptus species ranging in foliar N from 0.63% to 1.92% dry matter (DM) and digN from 0.45% to 1.73% DM. Both multispectral leaf reflectance and spectral indices were strong predictors for N and digN in model cross-validation. At the tree level, 79% of variability between observed and predicted measures of nitrogen was explained. A spatial supervised classification model correctly identified 80% of canopy pixels associated with high N concentrations (≥1% DM). We developed a successful method for estimating foliar nitrogen of a range of temperate Eucalyptus species using UAV multispectral imagery at the tree canopy level and stand scale. The ability to spatially quantify feeding habitat using UAV imagery allows remote assessments of greater glider habitat at a scale relevant to support ground surveys, management, and conservation for the vulnerable greater glider across southeastern Australia.
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    Structural diversity underpins carbon storage in Australian temperate forests
    Aponte, C ; Kasel, S ; Nitschke, CR ; Tanase, MA ; Vickers, H ; Parker, L ; Fedrigo, M ; Kohout, M ; Ruiz-Benito, P ; Zavala, MA ; Bennett, LT ; Hickler, T (WILEY, 2020-05)
    Abstract Aim Forest carbon storage is the result of a multitude of interactions among biotic and abiotic factors. Our aim was to use an integrative approach to elucidate mechanistic relationships of carbon storage with biotic and abiotic factors in the natural forests of temperate Australia, a region that has been overlooked in global analyses of carbon‐biodiversity relations. Location South‐eastern Australia. Time period 2010–2015. Major taxa studied Forest trees in 732 plots. Methods We used the most comprehensive forest inventory database available for south‐eastern Australia and structural equation models to assess carbon‐storage relationships with biotic factors (species or functional diversity, community‐weighted mean (CWM) trait values, structural diversity) and abiotic factors (climate, soil, fire history). To assess the consistency of relationships at different environmental scales, our analyses involved three levels of data aggregation: six forest types, two forest groups (representing different growth environments), and all forests combined. Results Structural diversity was consistently the strongest independent predictor of carbon storage at all levels of data aggregation, whereas relationships with species‐ and functional‐diversity indices were comparatively weak. CWMs of maximum height and wood density were also significant independent predictors of carbon storage in most cases. In comparison, climate, soil, and fire history had only minor and mainly indirect effects via biotic factors on carbon storage. Main conclusions Our results indicate that carbon storage in our temperate forests was underpinned by tree structural diversity (representing efficient utilisation of space) and by CWM trait values (representing selection effects) more so than by tree species richness or functional diversity. Abiotic effects were comparatively weak and mostly indirect via biotic factors irrespective of the environmental range. Our study highlights the importance of managing forests for functionally important species and to maintain and enhance their structural complexity in order to support carbon storage.
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    Climate extreme variables generated using monthly time-series data improve predicted distributions of plant species
    Stewart, SB ; Elith, J ; Fedrigo, M ; Kasel, S ; Roxburgh, SH ; Bennett, LT ; Chick, M ; Fairman, T ; Leonard, S ; Kohout, M ; Cripps, JK ; Durkin, L ; Nitschke, CR (WILEY, 2021-04)
    Extreme weather can have significant impacts on plant species demography; however, most studies have focused on responses to a single or small number of extreme events. Long‐term patterns in climate extremes, and how they have shaped contemporary distributions, have rarely been considered or tested. BIOCLIM variables that are commonly used in correlative species distribution modelling studies cannot be used to quantify climate extremes, as they are generated using long‐term averages and therefore do not describe year‐to‐year, temporal variability. We evaluated the response of 37 plant species to base climate (long‐term means, equivalent to BIOCLIM variables), variability (standard deviations) and extremes of varying return intervals (defined using quantiles) based on historical observations. These variables were generated using fine‐grain (approx. 250 m), time‐series temperature and precipitation data for the hottest, coldest and driest months over 39 years. Extremes provided significant additive improvements in model performance compared to base climate alone and were more consistent than variability across all species. Models that included extremes frequently showed notably different mapped predictions relative to those using base climate alone, despite often small differences in statistical performance as measured as a summary across sites. These differences in spatial patterns were most pronounced at the predicted range margins, and reflect the influence of coastal proximity, continentality, topography and orographic barriers on climate extremes. Species occupying hotter and drier locations that are exposed to severe maximum temperature extremes were associated with better predictive performance when modelled using extremes. Understanding how plant species have historically responded to climate extremes may provide valuable insights into our understanding of contemporary distributions and help to make more accurate predictions under a changing climate.
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    Climate Change Drives Habitat Contraction of a Nocturnal Arboreal Marsupial at Its Physiological Limits
    Wagner, B ; Baker, PJ ; Stewart, SB ; Lumsden, LF ; Nelson, JL ; Cripps, JK ; Durkin, LK ; Scroggie, MP ; Nitschke, CR (Wiley, 2021-01)
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    Climate change drives habitat contraction of a nocturnal arboreal marsupial at its physiological limits
    Wagner, B ; Baker, PJ ; Stewart, SB ; Lumsden, LF ; Nelson, JL ; Cripps, JK ; Durkin, LK ; Scroggie, MP ; Nitschke, CR (WILEY, 2020-10-01)
    Increasing impacts of climatic change and anthropogenic disturbances on natural ecosystems are leading to population declines or extinctions of many species worldwide. In Australia, recent climatic change has caused population declines in some native fauna. The projected increase in mean annual temperature by up to 4°C by the end of the 21st century is expected to exacerbate these trends. The greater glider (Petauroides volans), Australia’s largest gliding marsupial, is widely distributed along the eastern coast, but has recently experienced drastic declines in population numbers. Its association with hollow‐bearing trees, used for nesting, has made it an important species for the conservation of old‐growth forest ecosystems. Fires and timber harvesting have been identified as threats to the species. Greater gliders have disappeared however from areas that have experienced neither raising questions about the role of other factors in their decline. A unique physiology and strict Eucalyptus diet make them vulnerable to high temperatures and low water availability. As such, climatic conditions may drive habitat selection and recent climatic trends may be contributing to observed population declines. Using presence:absence data from across its distribution in Victoria, coupled with high spatial and temporal resolution climatic data and machine‐learning modeling, we tested the influence of climatic, topographic, edaphic, biotic, and disturbance variables on greater glider occupancy and habitat suitability. We found that climatic variables, particularly those related to aridity and extreme weather conditions, such as number of nights warmer than 20°C, were highly significant predictors of greater glider occurrence. Climatic conditions associated with habitat suitability have changed over time, with increasing aridity across much of its southeastern distribution. These changes in climate are closely aligned with observed population declines across this region. At higher elevation, some areas where the greater glider is observed at high densities, conditions have become wetter, which is improving habitat quality. These areas are of growing significance to greater glider conservation as they will become increasingly important as climatic refugia in the coming decades. Protecting these areas of habitat will be critical for facilitating the conservation of greater gliders as the broader landscape becomes less hospitable under future climatic change.
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    Genetic data and climate niche suitability models highlight the vulnerability of a functionally important plant species from south-eastern Australia
    Miller, AD ; Nitschke, C ; Weeks, AR ; Weatherly, WL ; Heyes, SD ; Sinclair, SJ ; Holland, OJ ; Stevenson, A ; Broadhurst, L ; Hoebee, SE ; Sherman, CDH ; Morgan, JW (WILEY, 2020-09)
    Habitat fragmentation imperils the persistence of many functionally important species, with climate change a new threat to local persistence due to climate niche mismatching. Predicting the evolutionary trajectory of species essential to ecosystem function under future climates is challenging but necessary for prioritizing conservation investments. We use a combination of population genetics and niche suitability models to assess the trajectory of a functionally important, but highly fragmented, plant species from south-eastern Australia (Banksia marginata, Proteaceae). We demonstrate significant genetic structuring among, and high level of relatedness within, fragmented remnant populations, highlighting imminent risks of inbreeding. Population simulations, controlling for effective population size (N e), suggest that many remnant populations will suffer rapid declines in genetic diversity due to drift in the absence of intervention. Simulations were used to demonstrate how inbreeding and drift processes might be suppressed by assisted migration and population mixing approaches that enhance the size and connectivity of remnant populations. These analyses were complemented by niche suitability models that predicted substantial reductions of suitable habitat by 2080; ~30% of the current distribution of the species climate niche overlaps with the projected distribution of the species climate niche in the geographic region by the 2080s. Our study highlights the importance of conserving remnant populations and establishing new populations in areas likely to support B. marginata in the future, and adopting seed sourcing strategies that can help populations overcome the risks of inbreeding and maladaptation. We also argue that ecological replacement of B. marginata using climatically suited plant species might be needed in the future to maintain ecosystem processes where B. marginata cannot persist. We recommend the need for progressive revegetation policies and practices to prevent further deterioration of species such as B. marginata and the ecosystems they support.