School of Agriculture, Food and Ecosystem Sciences - Research Publications
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ItemImpacts of human-induced environmental change in wetlands on aquatic animals(WILEY, 2018-02)Many wetlands harbour highly diverse biological communities and provide extensive ecosystem services; however, these important ecological features are being altered, degraded and destroyed around the world. Despite a wealth of research on how animals respond to anthropogenic changes to natural wetlands and how they use created wetlands, we lack a broad synthesis of these data. While some altered wetlands may provide vital habitat, others could pose a considerable risk to wildlife. This risk will be heightened if such wetlands are ecological traps - preferred habitats that confer lower fitness than another available habitat. Wetlands functioning as ecological traps could decrease both local and regional population persistence, and ultimately lead to extinctions. Most studies have examined how animals respond to changes in environmental conditions by measuring responses at the community and population levels, but studying ecological traps requires information on fitness and habitat preferences. Our current lack of knowledge of individual-level responses may therefore limit our capacity to manage wetland ecosystems effectively since ecological traps require different management practices to mitigate potential consequences. We conducted a global meta-analysis to characterise how animals respond to four key drivers of wetland alteration: agriculture, mining, restoration and urbanisation. Our overarching goal was to evaluate the ecological impacts of human alterations to wetland ecosystems, as well as identify current knowledge gaps that limit both the current understanding of these responses and effective wetland management. We extracted 1799 taxon-specific response ratios from 271 studies across 29 countries. Community- (e.g. richness) and population-level (e.g. density) measures within altered wetlands were largely comparable to those within reference wetlands. By contrast, individual fitness measures (e.g. survival) were often lower, highlighting the potential limitations of using only community- and population-level measures to assess habitat quality. Only four studies provided habitat-preference data, preventing investigation of the potential for altered wetlands to function as ecological traps. This is concerning because attempts to identify ecological traps may detect previously unidentified conservation risks. Although there was considerable variability amongst taxa, amphibians were typically the most sensitive taxon, and thus, may be a valuable bio-indicator of wetland quality. Despite suffering reduced survival and reproduction, measures such as time to and mass at metamorphosis were similar between altered and reference wetlands, suggesting that quantifying metamorphosis-related measures in isolation may not provide accurate information on habitat quality. Our review provides the most detailed evaluation to date of the ecological impacts of human alterations to wetland ecosystems. We emphasise that the role of wetlands in human-altered ecosystems can be complex, as they may represent important habitat but also pose potential risks to animals. Reduced availability of natural wetlands is increasing the importance of altered wetlands for aquatic animals. Consequently, we need to define what represents habitat quality from the perspective of animals, and gain a greater understanding of the underlying mechanisms of habitat selection and how these factors could be manipulated. Furthermore, strategies to enhance the quality of these wetlands should be implemented to maximise their conservation potential.
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ItemGenetic erosion and escalating extinction risk in frogs with increasing wildfire frequency(WILEY, 2017-06)Wildfires are increasing in both frequency and intensity in many ecosystems, with climate change models predicting further escalations in fire‐prone environments. Set against this background is the global decline of amphibians, with up to 40% of species facing extinction from multiple additive threats. Despite these disturbing figures, it is currently unclear how increasing fire frequency may impact the long‐term persistence of frog populations. Following a severe wildfire in south‐eastern Australia in 2009, field surveys indicated healthy tree frog populations. However, the 2009 fire had significant impacts on genetic diversity, including increased levels of inbreeding and declines in effective population size. Using stochastic population modelling under a range of fire‐frequency scenarios, we demonstrate that amphibian populations in fire‐prone environments may be increasingly vulnerable to extinction, particularly where rates of immigration are low. Synthesis and applications. This study of amphibian population genetics before and after a major wildfire emphasizes the importance of integrating both ecological and genetic data into population models. This will help managers make more appropriate conservation decisions regarding fire management of natural environments, especially those containing threatened populations. Priorities for agencies involved in planning controlled burns should consider carefully the timing of controlled burns, along with maintaining habitat connectivity.
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ItemFrog occupancy of polluted wetlands in urban landscapes(WILEY, 2019-04)Urban sprawl and the rising popularity of water-sensitive urban design of urban landscapes has led to a global surge in the number of wetlands constructed to collect and treat stormwater runoff in cities. However, contaminants, such as heavy metals and pesticides, in stormwater adversely affect the survival, growth, and reproduction of animals inhabiting these wetlands. A key question is whether wildlife can identify and avoid highly polluted wetlands. We investigated whether pond-breeding frogs are attempting to breed in wetlands that affect the fitness of their offspring across 67 urban wetlands in Melbourne, Australia. Frog species richness and the concentration of contaminants (heavy metals and pesticides) were not significantly related, even in the most polluted wetlands. The proportion of fringing vegetation at a wetland had the greatest positive influence on the number of frog species present and the probability of occurrence of individual species, indicating that frogs inhabited wetlands with abundant vegetation, regardless of their pollution status. These wetlands contained contaminant levels similar to urban wetlands around the world at levels that reduce larval amphibian survival. These results are, thus, likely generalizable to other areas, suggesting that urban managers could inadvertently be creating ecological traps in countless cities. Wetlands are important tools for the management of urban stormwater runoff, but their construction should not facilitate declines in wetland-dependent urban wildlife.
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ItemStormwater wetlands can function as ecological traps for urban frogs(WILEY, 2018-06)Around cities, natural wetlands are rapidly being destroyed and replaced with wetlands constructed to treat stormwater. Although the intended purpose of these wetlands is to manage urban stormwater, they are inhabited by wildlife that might be exposed to contaminants. These effects will be exacerbated if animals are unable to differentiate between stormwater treatment wetlands of varying quality and some function as "ecological traps" (i.e., habitats that animals prefer despite fitness being lower than in other habitats). To examine if urban stormwater wetlands can be ecological traps for frogs, we tested if survival, metamorphosis-related measures, and predator avoidance behaviors of frogs differed within mesocosms that simulated stormwater wetlands with different contaminant levels, and paired this with a natural oviposition experiment to assess breeding-site preferences. We provide the first empirical evidence that these wetlands can function as ecological traps for frogs. Tadpoles had lower survival and were less responsive to predator olfactory cues when raised in more polluted stormwater wetlands, but also reached metamorphosis earlier and at a larger size. A greater size at metamorphosis was likely a result of increased per capita food availability due to higher mortality combined with eutrophication, although other compensatory effects such as selective-mortality removing smaller individuals from low-quality mesocosms may also explain these results. Breeding adults laid comparable numbers of eggs across wetlands with high and low contaminant levels, indicating no avoidance of the former. Since stormwater treatment wetlands are often the only available aquatic habitat in urban landscapes we need to better understand how they perform as habitats to guide management decisions that mitigate their potential ecological costs. This may include improving wetland quality so that fitness is no longer compromised, preventing colonization by animals, altering the cues animals use when selecting habitats, pretreating contaminated water prior to release, providing off-line wetlands nearby, or simply not constructing stormwater treatment wetlands in sensitive areas. Our study confirms the potential for urban stormwater treatment wetlands to function as ecological traps and highlights the need for greater awareness of their prevalence and impact at landscape scales.
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ItemStructure and fragmentation of growling grass frog metapopulations(SPRINGER, 2013-04)Metapopulations occur in fragmented landscapes, and consist of demographically-independent populations connected by dispersal. Nevertheless, anthropogenic habitat fragmentation may be fatal to metapopulations, as it disrupts dispersal and gene flow, and undermines the balance between population extinction and colonization. Understanding the extent to which particular land-use practices disrupt dispersal and gene flow is therefore crucial for conserving metapopulations. We examined the structure and fragmentation of metapopulations of the endangered growling grass frog (Litoria raniformis) in an urbanizing landscape in southern Australia. Population clustering analyses revealed three distinct genetic units, corresponding to the three wetland clusters sampled. Isolation-by-distance was apparent between populations, and genetic distance was significantly correlated with the presence of urban barriers between populations. Our study provides evidence that urbanization fragments metapopulations of L. raniformis. Managers of L. raniformis in urbanizing landscapes should seek to mitigate effects of urbanization on dispersal and gene flow.
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ItemCorrecting common misconceptions to inspire conservation action in urban environments(WILEY, 2019-04)Despite repeated calls to action, proposals for urban conservation are often met with surprise or scepticism. There remains a pervasive narrative in policy, practice, and the public psyche that urban environments, although useful for engaging people with nature or providing ecosystem services, are of little conservation value. We argue that the tendency to overlook the conservation value of urban environments stems from misconceptions about the ability of native species to persist within cities and towns and that this, in turn, hinders effective conservation action. However, recent scientific evidence shows that these assumptions do not always hold. Although it is generally true that increasing the size, quality, and connectivity of habitat patches will improve the probability that a species can persist, the inverse is not that small, degraded, or fragmented habitats found in urban environments are worthless. In light of these findings we propose updated messages that guide and inspire researchers, practitioners, and decision makers to undertake conservation action in urban environments: consider small spaces, recognize unconventional habitats, test creative solutions, and use science to minimize the impacts of future urban development.
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ItemMulti-Scale, Direct and Indirect Effects of the Urban Stream Syndrome on Amphibian Communities in Streams(PUBLIC LIBRARY SCIENCE, 2013-07-29)Urbanization affects streams by modifying hydrology, increasing pollution and disrupting in-stream and riparian conditions, leading to negative responses by biotic communities. Given the global trend of increasing urbanization, improved understanding of its direct and indirect effects at multiple scales is needed to assist management. The theory of stream ecology suggests that the riverscape and the surrounding landscape are inextricably linked, and watershed-scale processes will also affect in-stream conditions and communities. This is particularly true for species with semi-aquatic life cycles, such as amphibians, which transfer energy between streams and surrounding terrestrial areas. We related measures of urbanization at different scales to frog communities in streams along an urbanization gradient in Melbourne, Australia. We used boosted regression trees to determine the importance of predictors and the shape of species responses. We then used structural equation models to investigate possible indirect effects of watershed imperviousness on in-stream parameters. The proportion of riparian vegetation and road density surrounding the site at the reach scale (500-m radius) had positive and negative effects, respectively, on species richness and on the occurrence of the two most common species in the area (Criniasignifera and Limnodynastesdumerilii). Road density and local aquatic vegetation interacted in influencing species richness, suggesting that isolation of a site can prevent colonization, in spite of apparently good local habitat. Attenuated imperviousness at the catchment scale had a negative effect on local aquatic vegetation, indicating possible indirect effects on frog species not revealed by single-level models. Processes at the landscape scale, particularly related to individual ranging distances, can affect frog species directly and indirectly. Catchment imperviousness might not affect adult frogs directly, but by modifying hydrology it can disrupt local vegetation and prove indirectly detrimental. Integrating multiple-scale management actions may help to meet conservation targets for streams in the face of urbanization.
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ItemIdentifying hybridization and admixture using SNPs: application of the DArTseq platform in phylogeographic research on vertebrates(ROYAL SOC, 2017-07)Next-generation sequencing (NGS) approaches are increasingly being used to generate multi-locus data for phylogeographic and evolutionary genetics research. We detail the applicability of a restriction enzyme-mediated genome complexity reduction approach with subsequent NGS (DArTseq) in vertebrate study systems at different evolutionary and geographical scales. We present two case studies using SNP data from the DArTseq molecular marker platform. First, we used DArTseq in a large phylogeographic study of the agamid lizard Ctenophorus caudicinctus, including 91 individuals and spanning the geographical range of this species across arid Australia. A low-density DArTseq assay resulted in 28 960 SNPs, with low density referring to a comparably reduced set of identified and sequenced markers as a cost-effective approach. Second, we applied this approach to an evolutionary genetics study of a classic frog hybrid zone (Litoria ewingii-Litoria paraewingi) across 93 individuals, which resulted in 48 117 and 67 060 SNPs for a low- and high-density assay, respectively. We provide a docker-based workflow to facilitate data preparation and analysis, then analyse SNP data using multiple methods including Bayesian model-based clustering and conditional likelihood approaches. Based on comparison of results from the DArTseq platform and traditional molecular approaches, we conclude that DArTseq can be used successfully in vertebrates and will be of particular interest to researchers working at the interface between population genetics and phylogenetics, exploring species boundaries, gene exchange and hybridization.
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ItemModelling the benefits of habitat restoration in socio-ecological systems(ELSEVIER SCI LTD, 2014-01)Decisions affecting the management of natural resources in agricultural landscapes are influenced by both social and ecological factors. Models that integrate these factors are likely to better predict the outcomes of natural resource management decisions compared to those that do not take these factors into account. We demonstrate how Bayesian Networks can be used to integrate ecological and social data and expert opinion to model the cost-effectiveness of revegetation activities for restoring biodiversity in agricultural landscapes. We demonstrate our approach with a case-study in grassy woodlands of south-eastern Australia. In our case-study, cost-effectiveness is defined as the improvement in native reptile and beetle species richness achieved per dollar spent on a restoration action. Socio-ecological models predict that weed control, the planting of trees and shrubs, the addition of litter and timber, and the addition of rocks are likely to be the most cost-effective actions for improving reptile and beetle species richness. The cost-effectiveness of restoration actions is lower in remnant and revegetated areas than in cleared areas because of the higher marginal benefits arising from acting in degraded habitats. This result is contingent on having favourable landowner attitudes. Under the best-case landowner demographic scenarios the greatest biodiversity benefits are seen when cleared areas are restored. We find that current restoration investment practices may not be increasing faunal species richness in agricultural landscapes in the most cost-effective way, and that new restoration actions may be necessary. Integrated socio-ecological models support transparent and cost-effective conservation investment decisions. Application of these models highlights the importance of collecting both social and ecological data when attempting to understand and manage socio-ecological systems.