Medical Biology - Research Publications
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ItemHaemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans(OXFORD UNIV PRESS, 2019-01-08)During haematopoiesis, haematopoietic stem cells differentiate into restricted potential progenitors before maturing into the many lineages required for oxygen transport, wound healing and immune response. We have updated Haemopedia, a database of gene-expression profiles from a broad spectrum of haematopoietic cells, to include RNA-seq gene-expression data from both mice and humans. The Haemopedia RNA-seq data set covers a wide range of lineages and progenitors, with 57 mouse blood cell types (flow sorted populations from healthy mice) and 12 human blood cell types. This data set has been made accessible for exploration and analysis, to researchers and clinicians with limited bioinformatics experience, on our online portal Haemosphere: https://www.haemosphere.org. Haemosphere also includes nine other publicly available high-quality data sets relevant to haematopoiesis. We have added the ability to compare gene expression across data sets and species by curating data sets with shared lineage designations or to view expression gene vs gene, with all plots available for download by the user.
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ItemHaemopedia: An Expression Atlas of Murine Hematopoietic Cells(CELL PRESS, 2016-09-13)Hematopoiesis is a multistage process involving the differentiation of stem and progenitor cells into distinct mature cell lineages. Here we present Haemopedia, an atlas of murine gene-expression data containing 54 hematopoietic cell types, covering all the mature lineages in hematopoiesis. We include rare cell populations such as eosinophils, mast cells, basophils, and megakaryocytes, and a broad collection of progenitor and stem cells. We show that lineage branching and maturation during hematopoiesis can be reconstructed using the expression patterns of small sets of genes. We also have identified genes with enriched expression in each of the mature blood cell lineages, many of which show conserved lineage-enriched expression in human hematopoiesis. We have created an online web portal called Haemosphere to make analyses of Haemopedia and other blood cell transcriptional datasets easier. This resource provides simple tools to interrogate gene-expression-based relationships between hematopoietic cell types and genes of interest.
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ItemErg is required for self-renewal of hematopoietic stem cells during stress hematopoiesis in mice(American Society of Hematology, 2011)Hematopoietic stem cells (HSCs) are rare residents of the bone marrow responsible for the lifelong production of blood cells. Regulation of the balance between HSC self renewal and differentiation is central to hematopoiesis, allowing precisely regulated generation of mature blood cells at steady-state and expanded production at times of rapid need, as well as maintaining ongoing stem cell capacity. Erg, a member of the Ets family of transcription factors, is deregulated in cancers and while Erg is known to be required for regulation of adult HSCs, its precise role has not been defined. We show here that although heterozygosity for functional Erg is sufficient for adequate steady state HSC maintenance, Erg+/Mld2 mutant mice exhibit impaired HSC self-renewal following bone marrow transplantation or during recovery from myelotoxic stress. Moreover, while mice functionally compromised for either Erg or Mpl, the receptor for TPO, a key regulator of HSC quiescence, maintained sufficient HSC activity to sustain hematopoiesis, Mpl-/- Erg+/Mld2 compound mutant mice displayed exacerbated stem cell deficiencies and bone marrow failure. Thus, Erg is a critical regulator of adult HSCs, essential for maintaining self renewal at times of high HSC cycling.