School of Physics - Research Publications
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ItemVortex lattice formation in dipolar Bose-Einstein condensates via rotation of the polarization(AMER PHYSICAL SOC, 2019-08-26)The behavior of a harmonically trapped dipolar Bose-Einstein condensate with its dipole moments rotating at angular frequencies lower than the transverse harmonic trapping frequency is explored in the co-rotating frame. We obtain semi-analytical solutions for the stationary states in the Thomas-Fermi limit of the corresponding dipolar Gross-Pitaevskii equation and utilize linear stability analysis to elucidate a phase diagram for the dynamical stability of these stationary solutions with respect to collective modes. These results are verified via direct numerical simulations of the dipolar Gross-Pitaevskii equation, which demonstrate that dynamical instabilities of the co-rotating stationary solutions lead to the seeding of vortices that eventually relax into a triangular lattice configuration. Our results illustrate that rotation of the dipole polarization represents a new route to vortex formation in dipolar Bose-Einstein condensates.
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ItemDiscovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site.(Springer Science and Business Media LLC, 2019-05-20)Substrates associate and products dissociate from enzyme catalytic sites rapidly, which hampers investigations of their trajectories. The high-resolution structure of the native Hordeum exo-hydrolase HvExoI isolated from seedlings reveals that non-covalently trapped glucose forms a stable enzyme-product complex. Here, we report that the alkyl β-D-glucoside and methyl 6-thio-β-gentiobioside substrate analogues perfused in crystalline HvExoI bind across the catalytic site after they displace glucose, while methyl 2-thio-β-sophoroside attaches nearby. Structural analyses and multi-scale molecular modelling of nanoscale reactant movements in HvExoI reveal that upon productive binding of incoming substrates, the glucose product modifies its binding patterns and evokes the formation of a transient lateral cavity, which serves as a conduit for glucose departure to allow for the next catalytic round. This path enables substrate-product assisted processive catalysis through multiple hydrolytic events without HvExoI losing contact with oligo- or polymeric substrates. We anticipate that such enzyme plasticity could be prevalent among exo-hydrolases.
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ItemDark Energy Survey year 1 results: Joint analysis of galaxy clustering, galaxy lensing, and CMB lensing two-point functions(AMER PHYSICAL SOC, 2019-07-26)We perform a joint analysis of the auto and cross-correlations between three cosmic fields: the galaxy density field, the galaxy weak lensing shear field, and the cosmic microwave background (CMB) weak lensing convergence field. These three fields are measured using roughly 1300 sq. deg. of overlapping optical imaging data from first year observations of the Dark Energy Survey (DES) and millimeter-wave observations of the CMB from both the South Pole Telescope Sunyaev-Zel’dovich survey and Planck. We present cosmological constraints from the joint analysis of the two-point correlation functions between galaxy density and galaxy shear with CMB lensing. We test for consistency between these measurements and the DES-only two-point function measurements, finding no evidence for inconsistency in the context of flat ΛCDM cosmological models. Performing a joint analysis of five of the possible correlation functions between these fields (excluding only the CMB lensing autospectrum) yields S8≡σ8√Ωm/0.3=0.782+0.019−0.025 and Ωm=0.260+0.029−0.019. We test for consistency between these five correlation function measurements and the Planck-only measurement of the CMB lensing autospectrum, again finding no evidence for inconsistency in the context of flat ΛCDM models. Combining constraints from all six two-point functions yields S8=0.776+0.014−0.021 and Ωm=0.271+0.022−0.016. These results provide a powerful test and confirmation of the results from the first year DES joint-probes analysis.
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ItemNo Preview AvailableCosmological lensing ratios with DES Y1, SPT, and Planck(OXFORD UNIV PRESS, 2019-07)ABSTRACT Correlations between tracers of the matter density field and gravitational lensing are sensitive to the evolution of the matter power spectrum and the expansion rate across cosmic time. Appropriately defined ratios of such correlation functions, on the other hand, depend only on the angular diameter distances to the tracer objects and to the gravitational lensing source planes. Because of their simple cosmological dependence, such ratios can exploit available signal-to-noise ratio down to small angular scales, even where directly modelling the correlation functions is difficult. We present a measurement of lensing ratios using galaxy position and lensing data from the Dark Energy Survey, and CMB lensing data from the South Pole Telescope and Planck, obtaining the highest precision lensing ratio measurements to date. Relative to the concordance ΛCDM model, we find a best-fitting lensing ratio amplitude of A = 1.1 ± 0.1. We use the ratio measurements to generate cosmological constraints, focusing on the curvature parameter. We demonstrate that photometrically selected galaxies can be used to measure lensing ratios, and argue that future lensing ratio measurements with data from a combination of LSST and Stage-4 CMB experiments can be used to place interesting cosmological constraints, even after considering the systematic uncertainties associated with photometric redshift and galaxy shear estimation.
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ItemNo Preview AvailableWeak-lensing mass calibration of the Sunyaev-Zel’dovich effect using APEX-SZ galaxy clusters(Oxford University Press, 2019)The use of galaxy clusters as precision cosmological probes relies on an accurate determination of their masses. However, inferring the relationship between cluster mass and observables from direct observations is difficult and prone to sample selection biases. In this work, we use weak lensing as the best possible proxy for cluster mass to calibrate the Sunyaev-Zel’dovich (SZ) effect measurements from the APEX-SZ experiment. For a well-defined (ROSAT) X-ray complete cluster sample, we calibrate the integrated Comptonization parameter, YSZ, to the weak-lensing derived total cluster mass, M500. We employ a novel Bayesian approach to account for the selection effects by jointly fitting both the SZ Comptonization, YSZ–M500, and the X-ray luminosity, Lx–M500, scaling relations. We also account for a possible correlation between the intrinsic (log-normal) scatter of Lx and YSZ at fixed mass. We find the corresponding correlation coefficient to be $r= 0.47_-0.35^+0.24$, and at the current precision level our constraints on the scaling relations are consistent with previous works. For our APEX-SZ sample, we find that ignoring the covariance between the SZ and X-ray observables biases the normalization of the YSZ–M500 scaling high by 1–2σ and the slope low by ∼1σ, even when the SZ effect plays no role in the sample selection. We conclude that for higher-precision data and larger cluster samples, as anticipated from on-going and near-future cluster cosmology experiments, similar biases (due to intrinsic covariances of cluster observables) in the scaling relations will dominate the cosmological error budget if not accounted for correctly.
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ItemValidation of a Novel Multivariate Method of Defining HIV-Associated Cognitive Impairment(OXFORD UNIV PRESS INC, 2019-06)BACKGROUND: The optimum method of defining cognitive impairment in virally suppressed people living with HIV is unknown. We evaluated the relationships between cognitive impairment, including using a novel multivariate method (NMM), patient- reported outcome measures (PROMs), and neuroimaging markers of brain structure across 3 cohorts. METHODS: Differences in the prevalence of cognitive impairment, PROMs, and neuroimaging data from the COBRA, CHARTER, and POPPY cohorts (total n = 908) were determined between HIV-positive participants with and without cognitive impairment defined using the HIV-associated neurocognitive disorders (HAND), global deficit score (GDS), and NMM criteria. RESULTS: The prevalence of cognitive impairment varied by up to 27% between methods used to define impairment (eg, 48% for HAND vs 21% for NMM in the CHARTER study). Associations between objective cognitive impairment and subjective cognitive complaints generally were weak. Physical and mental health summary scores (SF-36) were lowest for NMM-defined impairment ( P < .05).There were no differences in brain volumes or cortical thickness between participants with and without cognitive impairment defined using the HAND and GDS measures. In contrast, those identified with cognitive impairment by the NMM had reduced mean cortical thickness in both hemispheres ( P < .05), as well as smaller brain volumes ( P < .01). The associations with measures of white matter microstructure and brain-predicted age generally were weaker. CONCLUSION: Different methods of defining cognitive impairment identify different people with varying symptomatology and measures of brain injury. Overall, NMM-defined impairment was associated with most neuroimaging abnormalities and poorer self-reported health status. This may be due to the statistical advantage of using a multivariate approach.
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ItemNo Preview AvailableSearch strategies for long gravitational-wave transients: Hidden Markov model tracking and seedless clustering(AMER PHYSICAL SOC, 2019-07-16)
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ItemNo Preview AvailableTracking continuous gravitational waves from a neutron star at once and twice the spin frequency with a hidden Markov model(AMER PHYSICAL SOC, 2019-06-13)
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ItemNo Preview AvailableDirected searches for gravitational waves from ultralight bosons(AMER PHYSICAL SOC, 2019-04-26)