Computing and Information Systems - Research Publications

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    Modeling of microalgal shear-induced flocculation and sedimentation using a coupled CFD-population balance approach.
    Golzarijalal, M ; Zokaee Ashtiani, F ; Dabir, B (Wiley, 2018)
    In this study, shear-induced flocculation modeling of Chlorella sp. microalgae was conducted by combination of population balance modeling and CFD. The inhomogeneous Multiple Size Group (MUSIG) and the Euler-Euler two fluid models were coupled via Ansys-CFX-15 software package to achieve both fluid and particle dynamics during the flocculation. For the first time, a detailed model was proposed to calculate the collision frequency and breakage rate during the microalgae flocculation by means of the response surface methodology as a tool for optimization. The particle size distribution resulted from the model was in good agreement with that of the jar test experiment. Furthermore, the subsequent sedimentation step was also examined by removing the shear rate in both simulations and experiments. Consequently, variation in the shear rate and its effects on the flocculation behavior, sedimentation rate and recovery efficiency were evaluated. Results indicate that flocculation of Chlorella sp. microalgae under shear rates of 37, 182, and 387 s-1 is a promising method of pre-concentration which guarantees the cost efficiency of the subsequent harvesting process by recovering more than 90% of the biomass.
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    An effective and versatile distance measure for spatiotemporal trajectories
    Naderivesal, S ; Kulik, L ; Bailey, J (SPRINGER, 2019-05)
    The analysis of large-scale trajectory data has tremendous benefits for applications ranging from transportation planning to traffic management. A fundamental building block for the analysis of such data is the computation of similarity between trajectories. Existing work for similarity computation focuses mainly on the spatial aspects of trajectories, but more rarely takes into account time in conjunction with space. A key challenge when considering time is how to handle trajectories that are sampled asynchronously or at variable rates, which can lead to uncertainty. To tackle this problem, we quantify trajectory similarity as an interval, rather than a single value, to capture the uncertainty that can result from different sampling rates and asynchronous sampling. Based on this perspective, we develop a new trajectory similarity measure, Trajectory Interval Distance Estimation, which models similarity computation as a convex optimisation problem. Using two real datasets, we demonstrate that our proposed measure is extremely effective for assessing similarity in comparison to existing state of the art measures.
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    The disposition of the destitute
    Arnold, M ; Nansen, B ; Kohn, T ; Gibbs, M ; Harewood Gould, H (Council to Homeless Persons, 2019)
    The final disposition is a term used by people in the funeral industry to refer to the burial or cremation of a dead person. The final disposition is a profoundly important event, not simply a pragmatic or material process, and its significance is expressed through ritualised performances. The disposition and its rituals are shared and communal, involving ceremonies attended by the deceased’s family, friends, and community, whilst less indirectly the disposition is shared by wider social norms and values around the proper treatment of the deceased body. Although the disposition is common to us all, then, it is also a personalised event in which the particularity of the life lived is recognised. Similarly, the place of interment, whether body or ashes, is named and marked to recognise the individual life of the deceased. Places of interment are thus not only identified, but are also accessible to family, friends and community, for the purpose of ongoing visitation and remembrance.
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    ‘Death by Twitter’: Understanding false death announcements on social media and the performance of platform cultural capital
    Nansen, B ; O'Donnell, D ; Arnold, M ; Kohn, T ; Gibbs, M (University of Illinois Libraries, 2019)
    In this paper, we analyse false death announcements of public figures on social media and public responses to them. The analysis draws from a range of public sources to collect and categorise the volume of false death announcements on Twitter and undertakes a case study analysis of representative examples. We classify false death announcements according to five overarching types: accidental; misreported; misunderstood; hacked; and hoaxed. We identify patterns of user responses, which cycle through the sharing of the news, to personal grief, to a sense of uncertainty or disbelief. But we also identify more critical and cultural responses to such death announcements in relation to misinformation and the quality of digital news, or cultures of hoax and disinformation on social media. Here we see the performance of online identity through a form that we describe, following Bourdieu as ‘platform cultural capital’.
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    Finding Time for Tabletop: Board Game Play and Parenting
    Rogerson, MJ ; Gibbs, M (SAGE PUBLICATIONS INC, 2018)
    Hobby board gaming is a serious leisure pastime that entails large commitments of time and energy. When serious hobby board gamers become parents, their opportunities for engaging in the pastime are constrained by their new family responsibilities. Based on an ethnographic study of serious hobby board gamers, we investigate how play is constrained by parenting and how serious board gamers with these responsibilities create opportunities to continue to play board games by negotiating the context, time, location, and medium of play. We also examine how these changes influence the enjoyment players derive from board games across the key dimensions of sociality, intellectual challenge, variety, and materiality.
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    Multi-objective short-term production scheduling for open-pit mines: a hierarchical decomposition-based algorithm
    Blom, M ; Pearce, AR ; Stuckey, PJ (TAYLOR & FRANCIS LTD, 2018-12-02)
    This article presents a novel algorithm for solving a short-term open-pit production-scheduling problem in which several objectives, of varying priority, characterize the quality of each solution. A popular approach employs receding horizon control, dividing the horizon into N period-aggregates of increasing size (number of periods or span). An N-period mixed integer program (MIP) is solved for each period in the original horizon to incrementally construct a production schedule one period at a time. This article presents a new algorithm that, in contrast, decomposes the horizon into N period-aggregates of equal size. Given a schedule for these N periods, obtained by solving an N-period MIP, the first of these aggregates is itself decomposed into an N-period scheduling problem with guidance provided on what regions of the mine should be extracted. The performance of this hierarchical decomposition-based approach is compared with that of receding horizon control on a suite of data sets generated from an operating mine producing millions of tons of ore annually. As the number of objectives being optimized increases, the hierarchical decomposition-based algorithm outperforms receding horizon control, in a majority of instances.
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    Short-term planning for open pit mines: a review
    Blom, M ; Pearce, AR ; Stuckey, PJ (TAYLOR & FRANCIS LTD, 2019-07-04)
    This review examines the current state-of-the-art in short-term planning for open-pit mines, with a granularity that spans days, weeks or months, and a horizon of less than one to two years. In the academic literature, the short-term planning problem for open-pit mines has not been as widely considered as that for the medium- and long-term horizons. We highlight the differences between short- and longer term planning in terms of both the level of detail to which a mine site is modelled, and the objectives that are optimised when making decisions. We summarise the range of techniques that have been developed for generating short-term plans, capturing both mathematical programming-based methods and heuristic approaches using local-search and decomposition. We identify key challenges and future directions in which to advance the state-of-the-art in short-term planning for open-pit mines.
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    Reply: Limitations in the creation of an automatic diagnosis tool for dysgraphia
    Asselborn, T ; Gargot, T ; Kidzinski, L ; Johal, W ; Cohen, D ; Jolly, C ; Dillenbourg, P (NATURE RESEARCH, 2019-05-09)
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    Automated human-level diagnosis of dysgraphia using a consumer tablet
    Asselborn, T ; Gargot, T ; Kidzinski, L ; Johal, W ; Cohen, D ; Jolly, C ; Dillenbourg, P (NATURE PORTFOLIO, 2018-08-31)
    The academic and behavioral progress of children is associated with the timely development of reading and writing skills. Dysgraphia, characterized as a handwriting learning disability, is usually associated with dyslexia, developmental coordination disorder (dyspraxia), or attention deficit disorder, which are all neuro-developmental disorders. Dysgraphia can seriously impair children in their everyday life and require therapeutic care. Early detection of handwriting difficulties is, therefore, of great importance in pediatrics. Since the beginning of the 20th century, numerous handwriting scales have been developed to assess the quality of handwriting. However, these tests usually involve an expert investigating visually sentences written by a subject on paper, and, therefore, they are subjective, expensive, and scale poorly. Moreover, they ignore potentially important characteristics of motor control such as writing dynamics, pen pressure, or pen tilt. However, with the increasing availability of digital tablets, features to measure these ignored characteristics are now potentially available at scale and very low cost. In this work, we developed a diagnostic tool requiring only a commodity tablet. To this end, we modeled data of 298 children, including 56 with dysgraphia. Children performed the BHK test on a digital tablet covered with a sheet of paper. We extracted 53 handwriting features describing various aspects of handwriting, and used the Random Forest classifier to diagnose dysgraphia. Our method achieved 96.6% sensibility and 99.2% specificity. Given the intra-rater and inter-rater levels of agreement in the BHK test, our technique has comparable accuracy for experts and can be deployed directly as a diagnostics tool.
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    The PsyTAR dataset: From patients generated narratives to a corpus of adverse drug events and effectiveness of psychiatric medications.
    Zolnoori, M ; Fung, KW ; Patrick, TB ; Fontelo, P ; Kharrazi, H ; Faiola, A ; Shah, ND ; Shirley Wu, YS ; Eldredge, CE ; Luo, J ; Conway, M ; Zhu, J ; Park, SK ; Xu, K ; Moayyed, H (Elsevier BV, 2019-06)
    The "Psychiatric Treatment Adverse Reactions" (PsyTAR) dataset contains patients' expression of effectiveness and adverse drug events associated with psychiatric medications. The PsyTAR was generated in four phases. In the first phase, a sample of 891 drugs reviews posted by patients on an online healthcare forum, "askapatient.com", was collected for four psychiatric drugs: Zoloft, Lexapro, Cymbalta, and Effexor XR. For each drug review, patient demographic information, duration of treatment, and satisfaction with the drugs were reported. In the second phase, sentence classification, drug reviews were split to 6009 sentences, and each sentence was labeled for the presence of Adverse Drug Reaction (ADR), Withdrawal Symptoms (WDs), Sign/Symptoms/Illness (SSIs), Drug Indications (DIs), Drug Effectiveness (EF), Drug Infectiveness (INF), and Others (not applicable). In the third phases, entities including ADRs (4813 mentions), WDs (590 mentions), SSIs (1219 mentions), and DIs (792 mentions) were identified and extracted from the sentences. In the four phases, all the identified entities were mapped to the corresponding UMLS Metathesaurus concepts (916) and SNOMED CT concepts (755). In this phase, qualifiers representing severity and persistency of ADRs, WDs, SSIs, and DIs (e.g., mild, short term) were identified. All sentences and identified entities were linked to the original post using IDs (e.g., Zoloft.1, Effexor.29, Cymbalta.31). The PsyTAR dataset can be accessed via Online Supplement #1 under the CC BY 4.0 Data license. The updated versions of the dataset would also be accessible in https://sites.google.com/view/pharmacovigilanceinpsychiatry/home.