Chemical and Biomolecular Engineering - Theses

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    Material-based gene therapy approaches for HIV and neurodegenerative diseases
    Czuba-Wojnilowicz, Ewa Irena ( 2020)
    Gene therapy is of interest in medicine as it allows potential treatment of inherited and acquired diseases that cannot be treated or prevented using conventional methods. The introduction of new genetic material into the cells aims to improve cellular functions by either replacing a malfunctioning gene with a functional transgene or silencing the expression of specific genes implicated in various human diseases. The delivery of plasmid DNA provides an opportunity to replace defective or missing genes by utilizing cellular gene expression apparatus to produce encoded proteins. RNA therapeutics act via the RNA interference pathway to target intermediate gene expression product for degradation and prevent its translation to protein. Free nucleic acids typically experience rapid blood clearance and a short circulation lifetime and are unable to cross biological membranes due to electrostatic repulsion between DNA/RNA phosphate groups and phospholipids in the cell membrane. Therefore, there is a need to formulate gene carriers for improved pharmacokinetics of DNA/RNA therapeutics and efficient delivery to the site of action. The main objective of this research project was to develop material-based systems for gene delivery and apply it to HIV therapy and Friedreich’s ataxia (FRDA). Polyarginine-containing capsules were prepared via layer-by-layer assembly and enabled efficient complexation of anti-HIV siRNA. The functional effect via transcriptional gene silencing of the viral genome was demonstrated in virus-infected primary cells. To investigate how cellular changes associated with cell activation and viral infection influence the particle-cell interactions, particles association with activated primary cells and pseudovirus-infected T cells was investigated. In the second part of the thesis, the optimization of DNA binding by polyarginine-containing LbL core-shell particles and the delivery of frataxin-encoding plasmid DNA to address the FRDA-associated frataxin depletion was demonstrated using patient-derived iPSC neurons. The role of particle size, charge and density in the interaction of particles with iPSC 3D neuronal organoids was also demonstrated. This thesis presents the preparation and characterization of LbL-assembled particles as a versatile system with easily tailorable properties and its application in gene therapy for viral and neurodegenerative diseases. The presented research also aims to gain a fundamental understanding of bio-nano interactions in various biological systems.
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    Nanoengineered switchable, multi-responsive carriers for biomedical applications
    Liang, Kang ( 2014)
    Recent progress in material science and nanotechnology has enabled the design of next-generation drug delivery carriers. The implementation of such delivery systems has the potential to significantly enhance the current treatment outcomes, owing to their ability to achieve targeted bio-distribution and enhanced drug payloads. To develop the next generation of drug carriers, it is critical to incorporate a stimuli-responsive trigger into the material design. This allows for the development of “smart” carriers, which can load and release therapeutics in a specific targeted site on demand. Poly(2-diisopropylaminoethyl methacrylate) (PDPA) is a stimuli-responsive polymer that undergoes reversible hydrophobic-hydrophilic phase transition at biological-relevant pH variations. The incorporation of PDPA in the drug delivery systems opens a new route toward advanced drug delivery applications. This thesis focuses on developing several bottom-up approaches to assemble PDPA-based stimuli-responsive delivery systems from a material science perspective. By utilizing Layer-by-Layer (LbL) and self-assembly techniques, switchable, multifunctional systems that responded to various cellular conditions were synthesized. Charge-shifting PDPA capsules were synthesized via LbL assembly and cross-linked using a redox-responsive cross-linker. Dual stimuli-responsive cargo release profiles by pH and redox change were assessed in simulated intracellular conditions. Intracellular degradation kinetics of these capsules was investigated. The tuning of degradation kinetics was achieved by varying the degree of cross-linking density in the capsules, as confirmed by radio scintillation counting. Novel cross-linker free PDPA capsules were later developed. It was found that these capsules could improve the loading ability of drugs as small as 500 Da, and rapidly deconstruct and release cargo upon cellular uptake. Moreover, utilizing self-assembly techniques, multifunctional nanoparticles were synthesized from blending PDPA with an anti-cancer drug and a cell penetrating peptide. By varying the loading ratio in the nanoparticles, tunable cytotoxicity up to 30-fold was achieved. The reported PDPA-based responsive carriers are expected to provide fundamental insights towards the rational deign and synthesis of advanced delivery systems.
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    Poly(methacrylic acid) hydrogel capsules as a platform for biomedical applications
    SHIMONI, OLGA ( 2012)
    The design and assembly of biocompatible nanoengineered carriers is of interest due to their potential applications in biotechnology as tools for catalysis and sensing, in biomedicine as systems for drug delivery, in diagnostics, and in vivo imaging. The layer-by-layer (LbL) technology is a prominent technique to design carrier systems for biomedical applications. In recent years, poly(methacrylic acid) hydrogel capsules (PMA HCs), based on disulfide-stabilized poly(methacrylic acid), have been fabricated from the LbL technique, and thoroughly studied to gain control over their stability, degradability and cargo release. These capsules are obtained by the sequential deposition of thiolated poly(methacrylic acid) (PMASH) and poly(N-vinylpyrrolidone) (PVPON) onto silica particles via hydrogen bonding. Upon controlled crosslinking and removal of the silica template, PVPON is released at physiological conditions due to the disrupted hydrogen bonding between PMASH and PVPON, which results in single-component PMA hydrogel capsules. This work provides an insight into designing a novel architecture and biofunctionalization of PMA HCs for enhanced and targeted drug delivery. Specifically, this research describes novel hydrogel capsule architectures, namely subcompartmentalized hydrogel capsules (SHCs), which are designed for potential applications in drug delivery and microencapsulated biocatalysis. Examples of SHCs with tens of subcompartments are demonstrated with their successful drug/cargo loading, as well as selective degradation of the SHC carrier and/or sub-units in response to multiple chemical stimuli. To develop a facile surface functionalization approach of the PMA hydrogel capsules, retention of PVPON was employed through modification of the polymer to obtain a bifunctional polymeric linker. The antibody-functionalized PMA/PVPON HCs demonstrate significantly enhanced cellular binding and internalization to specific cells, suggesting these capsules can specifically interact with cells through antibody/antigen recognition. To understand the impact of aspect ratio on cellular function, PMA HCs were prepared with various aspect ratios. Careful control over aspect ratio of the silica rods provided the ability to control the aspect ratio of the PMA HCs. Upon incubation of these capsules with living cells, varied behavior was observed, suggesting different mechanisms for their interactions with cells.