Surgery (St Vincent's) - Theses

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    Bio-engineering vascularised liver organoids
    Yap, Kiryu Kee Loong ( 2022)
    Liver organoids are bioengineered constructs that recapitulate native liver tissue, and are used to study liver development, test drugs, and as replacement tissue that can be transplanted to treat liver disease. This thesis focusses on the specific application of liver organoids for use as a cell-based treatment for liver disease via organoid transplantation. It places a particular emphasis on the addition of vascularisation to liver organoids to enhance structure and function, and improve engraftment during in vivo transplantation. Initially, the effect of the addition of endothelial cells to create vascularised liver organoids was assessed using mouse cells. The addition of mouse liver sinusoidal endothelial cells (LSECs) to mouse liver progenitor cells (LPCs) resulted in a striking change in organoid morphology, with the development of hepatobiliary ductular structures and clusters of polygonal hepatocyte-like cells which did not appear when LPCs were cultured alone as organoids. Furthermore, in vitro hepatobiliary gene expression, hepatic synthetic functions (albumin and apolipoprotein E production) and organoid viability was significantly increased by the addition of LSECs. Upon transplantation into vascularised chambers established in Fah-/- Rag2-/- Il2rg-/- (FRG knockout) mice, LPC only organoids had almost zero survival at 2 weeks, whereas LPC/LSEC organoids developed robust hepatobiliary ductular structures with a 115-fold increase in HNF4a+ cells and 42-fold increase in Sox9+ cells. To translate the mouse findings into a humanised platform, human LPCs and LSECs and their human induced pluripotent stem cell (hiPSC)-derived counterparts were characterised. The hepatic differentiation of human primary adult LPCs and hiPSC derived LPCs into hepatocyte-like cells was confirmed based on cell morphology, marker expression, and function (albumin production), and transcriptomic profiling using bulk and single cell RNA sequencing. Concurrently, human primary adult LSECs were compared to hiPSC-derived endothelial cells(iECs). Although in vitro iECs had a generic endothelial phenotype very different to LSECs, when iECs were transplanted into mouse liver they underwent tissue specification to approximate LSECs, highlighting the importance of the liver microenvironment in this process. Subsequently, three types of vascularised human liver organoids were explored using primary human and hiPSC-derived cells. First, primary LPCs, LSECs and adipose-derived mesenchymal stem cells were combined in a human liver-derived extracellular matrix (ECM) hydrogel and seeded into bioabsorbable porous polyurethane scaffolds. Second, iECs were aggregated with hiPSC-derived hepatocyte (iHep) organoids to coat the surface of the iHep organoids. Third, single cell-type organoids were integrated to form a combination organoid created from hepatocyte, cholangiocyte, and vascular organoids. Of the three models, combining organoids of different cell types to create a combination organoid was deemed the best approach to derive complex liver organoids containing well-organised tissue structures such as polarised hepatocytes with bile canaliculi, bile ducts, and blood vessel networks. An overarching theme is that vascularisation is pivotal in the development of transplantable liver organoids. Adding endothelial cells promotes hepatobiliary differentiation, and pre-formed vasculature can significantly enhance the survival of transplanted liver organoids by hastening connection to the host’s blood supply. However, this is not easy to achieve and remains a challenge in the liver organoid field, and the production of well-vascularised liver organoids with sustained development of blood vessels over time in culture remains elusive. Nevertheless, the limitations and challenges identified in this thesis point towards future directions in addressing the issue of vascularisation. For clinical translation of liver organoid transplantation, hiPSC-derived cells are a more reliable source of personalised cells, and the ECM additive should be bio-synthetic and chemically-defined, rather than Matrigel. Ultimately, the results in this thesis support the exciting prospect of stem-cell derived liver organoids being used as a regenerative treatment for liver disease.
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    Strategies for engineering skeletal muscle: an important link in the neuroprosthetic interface of bionic limbs
    Ngan, Catherine G. Y. ( 2019)
    Limb amputation is a major cause of disability in our community, for which motorised prosthetic devices offer a return to function and independence. Advanced robotic limb technology utilises a range of mind-prosthetic interfacing strategies to intuitively drive the limb. These approaches include direct recording of peripheral nerves, brain-recording interfaces, or the transposition of transected nerves to remaining muscle groups for myoelectric recording. All of the current methods are hampered by delicate neural biology, either leading to premature device failure or introducing unnecessary surgical risk. As an alternative, this thesis proposes a new solution: to develop a bioelectrode using tissue engineered skeletal muscle as a signal amplifier of activity from residual nerves for intuitive prosthetic control. Conceptually, the fabrication of such a device would begin with a tissue biopsy from the patient from which a pool of myogenic stem cells would be derived and expanded. These autologous cells would be used for the tissue engineering of skeletal muscle fibres, primed with neurotrophic biofactors to optimise the tissue for innervation. Flexible recording wires could be incorporated into this fabrication step, thus eliminating the trauma of electrode insertion and also optimising its biocompatibility. The bioelectrode device could also be designed to patient or prosthetic anatomy as required. This thesis developed key elements of the above proposal. Firstly, a bioprinting technique was established to tissue engineer functional skeletal muscle using a gelatin methacryloyl (GelMA) bioink. Bioprinting enabled the rapid deposition of muscle progenitor cells (primary mouse myoblasts) in layered fibres, reminiscent of native muscle architecture. Fabrication parameters were optimised to produce fibres with high cell viability and print resolution. These bioprinted constructs were then able to support advanced maturation of cells into multinucleated muscle fibres, as evidenced by molecular analysis and functional testing. There was a significantly greater upregulation of genetic markers of myogenesis when compared to monolayer myotube cultures, and this result was complemented with functional testing that demonstrated mature patterns of calcium handling and electrical activity. The bioprinted muscle was then implanted in the nude rat to assess its capacity for innervation and vascularisation. The tissue construct was implanted in an in vivo chamber, which was supplied by a surgically formed arteriovenous loop and transected nerve. After only two weeks, independent bundles of mature muscle fibres had developed, with histological evidence of neural integration and vascularisation. In vivo electrophysiological studies confirmed the presence of innervation by demonstrating muscle activity in response to neural stimulation. Lastly, the triad of bioprinted muscle, vasculature and nerve was housed in a customised 3D printed chamber as a prototype for a bioelectrode that could be surgically grafted onto transected peripheral nerves after limb amputation. To conclude, this thesis developed the principle elements of designing a bioelectrode for neuroprosthetic interfacing and provides the foundation for further tissue optimisation and integration of electrodes. Although the work presented is in the frontier stages of development, it offers an exciting glimpse into the future of modern medicine and brings the dream of mind-controlled motorised prosthetic limbs closer to everyday reality.
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    Using a murine bioengineering model to study cancer cell biology: the effects of mammographic density on breast cancer progression
    HUO, CECILIA WANCHEN ( 2017)
    Breast cancer (BC) remains a leading cause of cancer-related morbidity and mortality for women worldwide. Mammographic density (MD) has been well recognized as a strong risk factor for BC, independent of its masking effect for small tumours on a mammogram. Due to the common presentation of high MD (HMD) in the community, especially in pre-menopausal women, MD is arguably the most important risk factor for BC when taking into account of its high population-attributable risk. However, much remains to be learned about the biological mechanism underlying MD-associated BC risk. My team previously utilised a murine engineering biochamber model to show that human breast tissues of high and low MD not only remained viable, but also maintained their radiological and histological features in relation to their MD status for at least 6 weeks. Extending from the prior findings, this PhD study aimed to further explore the biological mechanisms behind MD-associated BC risk, and is divided into four main sections: (i) I first attempted to develop the murine biochamber model further by implanting collagenase digested and flow cytometry sorted single cells to pave the way for manipulations of specific cell types that might be responsible for HMD. I found that collagenase digested and flow cytometry sorted single cells of high or low MD breast tissue reconstituted glandular organoids in murine chambers, albeit in limited numbers; (ii) second, based on a collection of human high and low MD breast tissues from prophylactic mastectomy procedures over a period of 5 years, I evaluated the histological differences between within-individual high and low MD mammary specimens of all participants, and found that the HMD tissue microenvironment was significantly altered compared with that of LMD -- HMD was characterised by increased levels of collagen organisation and quantity, aromatase immunoreactivity and immune cell infiltration of various subtypes; (iii) The serendipitous finding of increased immune cell presence in HMD led to my subsequent examination of the potential differences in immune cell representation between patient-matched high and low MD tissues, the immune infiltrates of both innate and adaptive system, and cytokines such as IL-6 and IL-4, and I found that immune cells of various subtypes were significantly raised in HMD tissue compared with LMD; and (iv) parallel to the human breast tissue studies, I also tested whether high and low MD human tissue had any direct effect on cancer cell growth and dissemination; using our murine biochamber model, I showed that compared to co-inoculation with LMD tissue, HMD tissue stimulated the progression of MCF10DCIS.com cells that represented cells of ductal carcinoma in situ (DCIS), to lesions resembling invasive ductal carcinomas, as well as their metastases in the mice hosting the murine biochambers. Over the past twenty years, the body of evidence on various aspects of MD and its associated BC risk has been expanding, however, to the best of my knowledge, (i) my study contained the largest cohort of high-risk women in Australia to characterise immunohistochemical and immune cell differences between high and low MD, and (ii) the work presented in this thesis is the first to utilise the murine biochamber xenograft model to test human breast organoids formation from single cells and to evaluate the direct effect of MD on human breast cancer cell progression in vivo. Collectively my work has defined that HMD is characterised by an increase in stromal cells, extracellular matrix and inflammation. I have shown that HMD stimulated the progression of early stage BC cells, which highlights the importance of MD being considered for BC diagnoses, treatments and surveillances.
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    Constructing a neuromuscular-prosthetic interface and actuator system for limb reconstruction
    Zhang, Bill Gao Xiang ( 2017)
    A neuromuscular prosthesis provides an ideal solution to functional restoration of the limb after amputation. In such a system, the severed nerves at the stump are implanted into denervated muscles and the innervated muscle is coupled to a human-machine interface which detects the body's signals and transmits it to the actuator. This thesis will present studies that address key components of this bio-prosthetic actuator system, namely the neuromuscular junction, the muscle electrode junction and the actuator system. An in vitro nerve muscle co-culture system was established as a model platform for studying the neuromuscular junction. The effect of agrin and laminin on the innervation of muscle cells was studied with immunocytochemistry, real time PCR and liver cell imaging. Agrin and laminin were found to sensitize muscle cells to innervation by PC12 cells forming more functional neuromuscular junctions and promoting muscle maturation. An in vitro model of the neuromuscular prosthetic interface was created from PC12 neural and primary mice myoblasts grown on multi-electrode arrays. Electrodes of the array were further coated with a conducting polymer polypyrrole to create a low impedance interface between the muscle cells and the electrode. The effect of polypyrrole coating thickness on the quality of the cell recording was assessed. The thickness of polypyrrole coating had no impact on the strength of the cell recording. Finally biocompatibility studies were performed on trilayer polypyrrole based actuators. Trilayer polypyrrole based actuators are known for their superior work density compared to natural muscle and existing actuators. When implanted into rabbit muscle, actuators that had pores engineered into it to encourage tissue integration showed significant polypyrrole delamination from the actuator. The degradation was slowed by sealing the cut edges of the pores on the actuator with polypyrrole. The biocompatibility results provide valuable insight into required design upgrades to existing polypyrrole based trilayered actuators. The work presented in this thesis serve as a basis and platform for further studies in integrating the neuromuscular junction, muscle electrode junction and the actuator into one unit for future translation.  
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    Osteochondral repair using structured biological scaffold and stem cell technologies
    Ye, Kenneth ( 2015)
    Introduction: Articular cartilage damage can result in pain and loss of function for many patients. The traditional management of moderate to severe defects has been difficult due to the lack of intrinsic capacity for cartilage to regenerate. Current methods of cartilage repair include microfracture, osteochondral grafting and autologous chondrocyte implantation. Whilst some individual studies comparing these techniques have shown improvements in long-term clinical outcomes in some patient groups compared to microfracture, major randomised control trials have failed to show consistent long-term differences in clinical outcomes between microfracture, osteochondral grafting, and autologous chondrocyte implantation. Hence, there is a clinical need to explore novel methods of cartilage repair and regeneration using biological techniques such as tissue engineering, stem cells, biomaterials, and growth/differentiation factors to improve cartilage regeneration. The aim of this project was to develop a technique using human infrapatellar fat pad adipose stem cells (IPFP-ASCs) in 3D cultures for chondrogenesis; this required extensive characterisation of the cartilage formed in the 3D cultures/scaffolds (3D pellet culture, chitosan and acellular dermal matrix) for in vitro chondrogenesis. In vivo testing and characterisation of osteochondral defect repair was achieved using a small animal rabbit model for preliminary testing of the ADM-engineered structures. This preliminary testing in the small animal model may then lead to pre-clinical trials in larger animals and human pilot studies in the future. Materials and methods: In vitro IPFPs were harvested from total knee replacements and digested to release adipose stem cells (IPFP-ASCs) which were expanded in vitro. Pellet cultures were developed using TGF-β3 and BMP-6 for chondrogenesis. IPFP-ASCs were seeded onto 3D printed chitosan scaffolds and acellular dermal matrix (ADM) material under the same chondrogenic conditions as the pellet cultures. Four-week cultures were analysed using histology, immunohistochemistry, and gene expression analysis using qPCR. In vivo Osteochondral defects were drilled into distal femoral condyles of adult New Zealand White rabbits. The defects were repaired using either (1) ADM alone (2) autologous IPFP-ASC (3) ADM with autologous IPFP-ASC) or (4) left empty as control. The animals were euthanised at 12 weeks. Repairs were analysed using histology and immunohistochemistry for collagen Type II and Type I. The modified O’Driscoll score was for histological scoring. Further image analysis was conducted to assess quality and quantity of repair. Results: IPFP-ASCs were capable of undergoing chondrogenesis in vitro using pellet cultures and when cultured directly on 3D chitosan and ADM scaffolds using the growth factor combination of TGF-β3 and BMP-6. The method of chondrogenesis was robust and was replicated across both human and rabbit IPFP-ASCs. A one-step single site surgical process was developed for the in vivo modelling of osteochondral defect repair and autologous IPFP-ASC implantation. In rabbits, the rabbit ADM only group achieved the highest ratio of collagen Type II to Type I (77.3%) on image analysis using area measures based from protein expression by immunohistochemistry. This indicated a higher quality of cartilage repair resembling hyaline or hyaline-like cartilage (p<0.05). Conclusion: IPFP-ASCs exhibited robust chondrogenesis under in vitro conditions used in this study; the combination of TGF-β3 and BMP-6 for generation of hyaline cartilage has demonstrated the potential for improving cartilage repair in vitro. ADM, as a support matrix, promoted ASC ingrowth in vitro and proved to be an excellent substrate to promote formation of hyaline-like cartilage in vitro. In the small animal in vivo experiments, it was clear that ADM exhibited positive outcomes when used as a substrate for osteochondral defect repair. These experiments need to be performed in a larger animal model to consolidate these findings prior to consideration of translational to pre-clinical studies.
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    Engineering articular cartilage from human infrapatellar fat pad stem cells for transplantation therapy
    Felimban, Raed ( 2015)
    Mesenchymal stem cells (MSCs) have shown promise in cartilage tissue engineering due to their unlimited capacity for self-renewal and capability to differentiate into cartilage tissue lineage under certain physiological or experimental conditions. In this thesis, we harvested MSCs from human infrapatellar fat pad tissue (hIPFP) and further fully characterised using flow cytometry. Human IPFP-derived MSCs at passage three (P3) show good homogeneity for MSCs cluster differentiation (CD) markers including CD29, CD44, CD73, CD90, and CD105. Hyaline articular cartilage repair is a significant challenge in orthopaedics and traditional therapeutic options result in inferior outcomes. We believe traditional methods can be improved through applications based on three-dimension (3D) culture systems and tissue engineering strategies. In this thesis, we planned to investigate the chondrogenic potential of hIPFP-derived MSCs, stimulated by TGFβ3 and BMP6, over 7, 14 and 28 day in vitro in 3D pellet culture, a 3D printed chitosan scaffold and a 3D scaffold comprising methacrylated hyaluronic acid and methacrylated gelatin (called HA/GelMA). Therefore, endpoints included histology staining, immunohistochemistry, immunofluorescence, and temporal changes in expression of specific chondrogenic genes using quantitative real-time polymerase chain reaction (qPCR). In vitro 3D pellet culture maintained cells to be in close proximity to each other and promoted cell aggregation that mimics the cellular condensation process within native cartilage tissue. Furthermore, research has shown the potential of 3D biomaterial scaffolds for providing a suitable environment for chondrogenic induction and significantly enhancing the proliferation, differentiation, and chondrocytic extracellular matrix synthesis by MSCs. Collaborators at the Intelligent Polymer Research Institute (IPRI) at the Uiversity of Wollongong have developed extrusion printing for diverse bioengineering projects and this technique has developed for provision of both 3D chitosan scaffolds and 3D hyaluronic acid/biogel scaffolds for this project. The biocompatibility of chitosan and its structural similarity with glycosaminoglycan make it attractive for cartilage tissue engineering. Also, methacrylated HA and gelatin polymers were utilised to produce UV- crosslinkable HA/GelMA scaffold. A cartilage extracellular matrix component, HA, is the main non-sulphated glycosaminoglycan and offers a promise candidate for engineering of cartilage. In all three types of cultures (pellet, chitosan and HA/GelMA), over 14–28 days, clusters of encapsulated chondrocytes formed. Collagen type 2 and proteoglycan production were confirmed using immunohistochemistry and immunoflourescence. Chondrogenic lineage markers including: SRY-related transcription factor (SOX9), collagen type 2 alpha 1 (COL2A1), and aggrecan (ACAN) gene expression increased significantly over the time course. We reported that chitosan and HA/GelMA scaffolds enhance and increase the efficiency of chondrogenesis in our model. Finally, advanced microarray technique was conducted to provide novel informations about overall gene expressions during chondrogenesis across all three cultures. This is the first time that in vitro microarray has been used in the assessment of the chondrogenic differentiation of hIPFP-derived MSCs cultured in 3D pellet and seeded into chitosan and HA/GelMA scaffolds. Microarray gene analysis requires high-end programming for assessment of the test statistics that show whether a particular gene or a set of related genes are highly regulated (up- or down-regulated). Another challenge is to select a ‘ranking of expressed genes’ that may be relevant to a particular set of experimental conditions or of particular interest from a biological perspective (e.g. a particular metabolic pathway or a set of apoptotic genes). Therefore, we have successfully demonstrated in vitro production of hyaline-like cartilage from infrapatellar fat pad (IPFP)-derived MSCs in 3D culture. Microarray has provided novel informations concerning genes involved in chondrogenesis of hIPFP- derived MSCs and our approach offers a viable strategy for generating clinically relevant cartilage for therapeutic use.