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    Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genus Hapavirus, family Rhabdoviridae

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    Author
    Gubala, A; Walsh, S; McAllister, J; Weir, R; Davis, S; Melville, L; Mitchell, I; Bulach, D; Gauci, P; Skvortsov, A; ...
    Date
    2017-07-11
    Source Title
    Evolutionary Bioinformatics
    Publisher
    SAGE PUBLICATIONS LTD
    University of Melbourne Author/s
    Bulach, Dieter
    Affiliation
    Microbiology and Immunology
    Metadata
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    Document Type
    Journal Article
    Citations
    Gubala, A., Walsh, S., McAllister, J., Weir, R., Davis, S., Melville, L., Mitchell, I., Bulach, D., Gauci, P., Skvortsov, A. & Boyle, D. (2017). Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genus Hapavirus, family Rhabdoviridae. EVOLUTIONARY BIOINFORMATICS, 13, https://doi.org/10.1177/1176934317713484.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/254919
    DOI
    10.1177/1176934317713484
    Abstract
    Viruses of the family Rhabdoviridae infect a broad range of hosts from a variety of ecological and geographical niches, including vertebrates, arthropods, and plants. The arthropod-transmitted members of this family display considerable genetic diversity and remarkable genomic flexibility that enable coding for various accessory proteins in different locations of the genome. Here, we describe the genome of Holmes Jungle virus, isolated from Culex annulirostris mosquitoes collected in northern Australia, and make detailed comparisons with the closely related Ord River and Wongabel viruses, with a focus on identifying very small open reading frames (smORFs) in their genomes. This is the first systematic prediction of smORFs in rhabdoviruses, emphasising the intricacy of the rhabdovirus genome and the knowledge gaps. We speculate that these smORFs may be of importance to the life cycle of the virus in the arthropod vector.

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