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    lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

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    Author
    Quek, XC; Thomson, DW; Maag, JLV; Bartonicek, N; Signal, B; Clark, MB; Gloss, BS; Dinger, ME
    Date
    2015-01-28
    Source Title
    Nucleic Acids Research
    Publisher
    OXFORD UNIV PRESS
    University of Melbourne Author/s
    Clark, Michael
    Affiliation
    Anatomy and Neuroscience
    Metadata
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    Document Type
    Journal Article
    Citations
    Quek, X. C., Thomson, D. W., Maag, J. L. V., Bartonicek, N., Signal, B., Clark, M. B., Gloss, B. S. & Dinger, M. E. (2015). lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. NUCLEIC ACIDS RESEARCH, 43 (D1), pp.D168-D173. https://doi.org/10.1093/nar/gku988.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/255223
    DOI
    10.1093/nar/gku988
    NHMRC Grant code
    NHMRC/1072662
    Abstract
    Despite the prevalence of long noncoding RNA (lncRNA) genes in eukaryotic genomes, only a small proportion have been examined for biological function. lncRNAdb, available at http://lncrnadb.org, provides users with a comprehensive, manually curated reference database of 287 eukaryotic lncRNAs that have been described independently in the scientific literature. In addition to capturing a great proportion of the recent literature describing functions for individual lncRNAs, lncRNAdb now offers an improved user interface enabling greater accessibility to sequence information, expression data and the literature. The new features in lncRNAdb include the integration of Illumina Body Atlas expression profiles, nucleotide sequence information, a BLAST search tool and easy export of content via direct download or a REST API. lncRNAdb is now endorsed by RNAcentral and is in compliance with the International Nucleotide Sequence Database Collaboration.

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