RNAcentral: a comprehensive database of non-coding RNA sequences

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    Author
    Petrov, AI; Kay, SJE; Kalvari, I; Howe, KL; Gray, KA; Bruford, EA; Kersey, PJ; Cochrane, G; Finn, RD; Bateman, A; ...
    Date
    2017-01-04
    Source Title
    Nucleic Acids Research
    Publisher
    OXFORD UNIV PRESS
    University of Melbourne Author/s
    Clark, Michael
    Affiliation
    Anatomy and Neuroscience
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    Document Type
    Journal Article
    Citations
    Petrov, A. I., Kay, S. J. E., Kalvari, I., Howe, K. L., Gray, K. A., Bruford, E. A., Kersey, P. J., Cochrane, G., Finn, R. D., Bateman, A., Kozomara, A., Griffiths-Jones, S., Frankish, A., Zwieb, C. W., Lau, B. Y., Williams, K. P., Chan, P. P., Lowe, T. M., Cannone, J. J. ,... Dinger, M. E. (2017). RNAcentral: a comprehensive database of non-coding RNA sequences. NUCLEIC ACIDS RESEARCH, 45 (D1), pp.D128-D134. https://doi.org/10.1093/nar/gkw1008.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/255347
    DOI
    10.1093/nar/gkw1008
    Abstract
    RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.

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