Knocking down the obstacles to functional genomics data sharing
AuthorSimpson, KJ; Smith, JA
Source TitleScientific Data
PublisherNATURE PUBLISHING GROUP
University of Melbourne Author/sSimpson, Kaylene
Document TypeJournal Article
CitationsSimpson, K. J. & Smith, J. A. (2017). Knocking down the obstacles to functional genomics data sharing. SCIENTIFIC DATA, 4 (1), https://doi.org/10.1038/sdata.2017.19.
Access StatusOpen Access
This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses.
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