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    Knocking down the obstacles to functional genomics data sharing

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    Author
    Simpson, KJ; Smith, JA
    Date
    2017-03-01
    Source Title
    Scientific Data
    Publisher
    NATURE PUBLISHING GROUP
    University of Melbourne Author/s
    Simpson, Kaylene
    Affiliation
    Clinical Pathology
    Metadata
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    Document Type
    Journal Article
    Citations
    Simpson, K. J. & Smith, J. A. (2017). Knocking down the obstacles to functional genomics data sharing. SCIENTIFIC DATA, 4 (1), https://doi.org/10.1038/sdata.2017.19.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/255530
    DOI
    10.1038/sdata.2017.19
    Abstract
    This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses.

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