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    High concordance between Illumina HiSeq2500 and NextSeq500 for reduced representation bisulfite sequencing (RRBS)

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    Author
    Yin, D; Ritchie, ME; Jabbari, JS; Beck, T; Blewitt, ME; Keniry, A
    Date
    2016-12-01
    Source Title
    Genomics Data
    Publisher
    ELSEVIER SCIENCE BV
    University of Melbourne Author/s
    Blewitt, Marnie; Ritchie, Matthew; Keniry, Andrew
    Affiliation
    Medical Biology (W.E.H.I.)
    Metadata
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    Document Type
    Journal Article
    Citations
    Yin, D., Ritchie, M. E., Jabbari, J. S., Beck, T., Blewitt, M. E. & Keniry, A. (2016). High concordance between Illumina HiSeq2500 and NextSeq500 for reduced representation bisulfite sequencing (RRBS). GENOMICS DATA, 10, pp.97-100. https://doi.org/10.1016/j.gdata.2016.10.002.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/257056
    DOI
    10.1016/j.gdata.2016.10.002
    Abstract
    Reduced representation bisulfite sequencing (RRBS) provides an efficient method for measuring DNA methylation at single base resolution in regions of high CpG density. This technique has been extensively tested on the HiSeq2500, which uses a 4-colour detection method, however it is unclear if the method will also work on the NextSeq500 platform, which employs a 2-colour detection system. We created an RRBS library and sequenced it on both the HiSeq2500 and NextSeq500, and found no significant difference in the base composition of reads derived from either machine. Moreover, the methylation calls made from the data of each instrument were highly concordant, with methylation patterns across the genome appearing as expected. Therefore, RRBS can be sequenced on the Nextseq500 with comparable quality to that of the HiSeq2500. All sequencing data are deposited in the GEO database under accession number GSE87097.

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