X-MATE: a flexible system for mapping short read data
AuthorWood, DLA; Xu, Q; Pearson, JV; Cloonan, N; Grimmond, SM
PublisherOXFORD UNIV PRESS
University of Melbourne Author/sGrimmond, Sean
AffiliationCentre for Cancer Research
Document TypeJournal Article
CitationsWood, D. L. A., Xu, Q., Pearson, J. V., Cloonan, N. & Grimmond, S. M. (2011). X-MATE: a flexible system for mapping short read data. BIOINFORMATICS, 27 (4), pp.580-581. https://doi.org/10.1093/bioinformatics/btq698.
Access StatusOpen Access
SUMMARY: Accurate and complete mapping of short-read sequencing to a reference genome greatly enhances the discovery of biological results and improves statistical predictions. We recently presented RNA-MATE, a pipeline for the recursive mapping of RNA-Seq datasets. With the rapid increase in genome re-sequencing projects, progression of available mapping software and the evolution of file formats, we now present X-MATE, an updated version of RNA-MATE, capable of mapping both RNA-Seq and DNA datasets and with improved performance, output file formats, configuration files, and flexibility in core mapping software. AVAILABILITY: Executables, source code, junction libraries, test data and results and the user manual are available from http://grimmond.imb.uq.edu.au/X-MATE/.
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