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dc.contributor.authorWood, DLA
dc.contributor.authorXu, Q
dc.contributor.authorPearson, JV
dc.contributor.authorCloonan, N
dc.contributor.authorGrimmond, SM
dc.date.accessioned2020-12-22T05:14:43Z
dc.date.available2020-12-22T05:14:43Z
dc.date.issued2011-02-15
dc.identifierpii: btq698
dc.identifier.citationWood, D. L. A., Xu, Q., Pearson, J. V., Cloonan, N. & Grimmond, S. M. (2011). X-MATE: a flexible system for mapping short read data. BIOINFORMATICS, 27 (4), pp.580-581. https://doi.org/10.1093/bioinformatics/btq698.
dc.identifier.issn1367-4803
dc.identifier.urihttp://hdl.handle.net/11343/258243
dc.description.abstractSUMMARY: Accurate and complete mapping of short-read sequencing to a reference genome greatly enhances the discovery of biological results and improves statistical predictions. We recently presented RNA-MATE, a pipeline for the recursive mapping of RNA-Seq datasets. With the rapid increase in genome re-sequencing projects, progression of available mapping software and the evolution of file formats, we now present X-MATE, an updated version of RNA-MATE, capable of mapping both RNA-Seq and DNA datasets and with improved performance, output file formats, configuration files, and flexibility in core mapping software. AVAILABILITY: Executables, source code, junction libraries, test data and results and the user manual are available from http://grimmond.imb.uq.edu.au/X-MATE/.
dc.languageEnglish
dc.publisherOXFORD UNIV PRESS
dc.rights.urihttps://creativecommons.org/licenses/by-nc/4.0
dc.titleX-MATE: a flexible system for mapping short read data
dc.typeJournal Article
dc.identifier.doi10.1093/bioinformatics/btq698
melbourne.affiliation.departmentCentre for Cancer Research
melbourne.source.titleBioinformatics
melbourne.source.volume27
melbourne.source.issue4
melbourne.source.pages580-581
dc.rights.licenseCC BY-NC
melbourne.elementsid1033302
melbourne.contributor.authorGrimmond, Sean
dc.identifier.eissn1460-2059
melbourne.accessrightsOpen Access


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