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dc.contributor.authorMarcelino, VR
dc.contributor.authorVerbruggen, H
dc.date.accessioned2020-12-22T05:26:54Z
dc.date.available2020-12-22T05:26:54Z
dc.date.issued2017-04-01
dc.identifierpii: S2352-3409(17)30032-X
dc.identifier.citationMarcelino, V. R. & Verbruggen, H. (2017). Reference datasets of tufAle and UPA markers to identify algae in metabarcoding surveys. DATA IN BRIEF, 11, pp.273-276. https://doi.org/10.1016/j.dib.2017.02.013.
dc.identifier.issn2352-3409
dc.identifier.urihttp://hdl.handle.net/11343/258290
dc.description.abstractThe data presented here are related to the research article "Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae" (Marcelino and Verbruggen, 2016) [1]. Here we provide reference datasets of the elongation factor Tu (tufA) and the Universal Plastid Amplicon (UPA) markers in a format that is ready-to-use in the QIIME pipeline (Caporaso et al., 2010) [2]. In addition to sequences previously available in GenBank, we included newly discovered endolithic algae lineages using both amplicon sequencing (Marcelino and Verbruggen, 2016) [1] and chloroplast genome data (Marcelino et al., 2016; Verbruggen et al., in press) [3], [4]. We also provide a script to convert GenBank flatfiles into reference datasets that can be used with other markers. The tufA and UPA reference datasets are made publicly available here to facilitate biodiversity assessments of microalgal communities.
dc.languageEnglish
dc.publisherELSEVIER SCIENCE BV
dc.rights.urihttps://creativecommons.org/licenses/by/4.0
dc.titleReference datasets of tufAle and UPA markers to identify algae in metabarcoding surveys
dc.typeJournal Article
dc.identifier.doi10.1016/j.dib.2017.02.013
melbourne.affiliation.departmentSchool of BioSciences
melbourne.source.titleData in Brief
melbourne.source.volume11
melbourne.source.pages273-276
melbourne.identifier.arcFT110100585
melbourne.identifier.arcDP150100705
dc.rights.licenseCC BY
melbourne.elementsid1190803
melbourne.contributor.authorVerbruggen, Heroen
dc.identifier.eissn2352-3409
melbourne.identifier.fundernameidAUST RESEARCH COUNCIL, FT110100585
melbourne.identifier.fundernameidAustralian Research Council, DP150100705
melbourne.accessrightsOpen Access


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