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    NRED: a database of long noncoding RNA expression

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    Author
    Dinger, ME; Pang, KC; Mercer, TR; Crowe, ML; Grimmond, SM; Mattick, JS
    Date
    2009-01-01
    Source Title
    Nucleic Acids Research
    Publisher
    OXFORD UNIV PRESS
    University of Melbourne Author/s
    Grimmond, Sean
    Affiliation
    Centre for Cancer Research
    Metadata
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    Document Type
    Journal Article
    Citations
    Dinger, M. E., Pang, K. C., Mercer, T. R., Crowe, M. L., Grimmond, S. M. & Mattick, J. S. (2009). NRED: a database of long noncoding RNA expression. NUCLEIC ACIDS RESEARCH, 37 (Database issue), pp.D122-D126. https://doi.org/10.1093/nar/gkn617.
    Access Status
    Open Access
    URI
    http://hdl.handle.net/11343/260134
    DOI
    10.1093/nar/gkn617
    Abstract
    In mammals, thousands of long non-protein-coding RNAs (ncRNAs) (>200 nt) have recently been described. However, the biological significance and function of the vast majority of these transcripts remain unclear. We have constructed a public repository, the Noncoding RNA Expression Database (NRED), which provides gene expression information for thousands of long ncRNAs in human and mouse. The database contains both microarray and in situ hybridization data, much of which is described here for the first time. NRED also supplies a rich tapestry of ancillary information for featured ncRNAs, including evolutionary conservation, secondary structure evidence, genomic context links and antisense relationships. The database is available at http://jsm-research.imb.uq.edu.au/NRED, and the web interface enables both advanced searches and data downloads. Taken together, NRED should significantly advance the study and understanding of long ncRNAs, and provides a timely and valuable resource to the scientific community.

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