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dc.contributor.authorSmith, ML
dc.contributor.authorBaggerly, KA
dc.contributor.authorBengtsson, H
dc.contributor.authorRitchie, ME
dc.contributor.authorHansen, KD
dc.date.accessioned2021-02-05T01:25:41Z
dc.date.available2021-02-05T01:25:41Z
dc.date.issued2013
dc.identifier.citationSmith, M. L., Baggerly, K. A., Bengtsson, H., Ritchie, M. E. & Hansen, K. D. (2013). illuminaio: An open source IDAT parsing tool for Illumina microarrays.. F1000Res, 2, pp.264-. https://doi.org/10.12688/f1000research.2-264.v1.
dc.identifier.issn2046-1402
dc.identifier.urihttp://hdl.handle.net/11343/260393
dc.description.abstractThe IDAT file format is used to store BeadArray data from the myriad of genomewide profiling platforms on offer from Illumina Inc. This proprietary format is output directly from the scanner and stores summary intensities for each probe-type on an array in a compact manner. A lack of open source tools to process IDAT files has hampered their uptake by the research community beyond the standard step of using the vendor's software to extract the data they contain in a human readable text format. To fill this void, we have developed the illuminaio package that parses IDAT files from any BeadArray platform, including the decryption of files from Illumina's gene expression arrays. illuminaio provides the first open-source package for this task, and will promote wider uptake of the IDAT format as a standard for sharing Illumina BeadArray data in public databases, in the same way that the CEL file serves as the standard for the Affymetrix platform.
dc.languageeng
dc.publisherF1000 Research Ltd
dc.rights.urihttps://creativecommons.org/licenses/by/4.0
dc.titleilluminaio: An open source IDAT parsing tool for Illumina microarrays.
dc.typeJournal Article
dc.identifier.doi10.12688/f1000research.2-264.v1
melbourne.affiliation.departmentMedical Biology (W.E.H.I.)
melbourne.affiliation.facultyMedicine, Dentistry & Health Sciences
melbourne.source.titleF1000Research
melbourne.source.volume2
melbourne.source.pages264-
dc.rights.licenseCC BY
melbourne.elementsid974299
melbourne.openaccess.pmchttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968891
melbourne.contributor.authorRitchie, Matthew
dc.identifier.eissn2046-1402
melbourne.accessrightsOpen Access


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